View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_10 (Length: 598)
Name: NF10923_low_10
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 41 - 520
Target Start/End: Original strand, 45756907 - 45757388
Alignment:
| Q |
41 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacatgaagatttcaccttattagatattcgcattttgcgatcattattaactt |
140 |
Q |
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| T |
45756907 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacattaagatttcaccttattagatattcgcattttgccaccattattaactt |
45757006 |
T |
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| Q |
141 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttnnnnnnnntggtaacataccactaattagagttccaa |
240 |
Q |
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| T |
45757007 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttaaaaaaaatggtaacataccactaattagagttccaa |
45757106 |
T |
|
| Q |
241 |
tggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattattactactagtgaatatagaacatcttaattaacatgca |
340 |
Q |
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| T |
45757107 |
tggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattactactactagtgaatatagaacatc----ttaacatgca |
45757202 |
T |
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| Q |
341 |
taatataatatgtttccattatgttttgggcgcatgcacatgcacatgcacatagaatgatgcttcctacctta------------ctatagtggaagat |
428 |
Q |
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| T |
45757203 |
taatataatatgtttccattatgttttgggcg------catgcacatgcacatagaatgatgcttcctaccttacatcaatataagctatagtgggagat |
45757296 |
T |
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| Q |
429 |
ttatacggtcacattttatttcgtggaaagtgattgattcccaaactcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
520 |
Q |
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| T |
45757297 |
ttatacggtcgcattttatttcgtggaaagtgattgattcccaaactcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
45757388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45756825 - 45756869
Alignment:
| Q |
1 |
ggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
45 |
Q |
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| T |
45756825 |
ggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
45756869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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