View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_11 (Length: 591)
Name: NF10923_low_11
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 27522595 - 27522322
Alignment:
| Q |
13 |
aaggccacaaatgaagtgaatatttccacccataaaagccccaaaagtgacagccgggttagcatggccacataacatgtaaggattcacgacgatgatc |
112 |
Q |
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| T |
27522595 |
aaggcaacgaatgaagtgaatatttccacccataaaagccccaaaagtgacagccgggttagcatggccacataacgtgtaaggatttacggcgatgatc |
27522496 |
T |
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| Q |
113 |
ctagctcttatatacacggcggcagagagggcaaaagtgtgagcgatcgtggtggcgatgagactaaaggccgcgtcatctccggtgagatttcttacgg |
212 |
Q |
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| T |
27522495 |
ctagctcctatatacacggcggcagagagggcaaaagcgtgagcgatcgcggtggcgatgagactaaaggccgcgtcatctccggtgagatttcttacga |
27522396 |
T |
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| Q |
213 |
tgatgcgagagtcgatatgctggcaaaaacgaagatgaatgtggaaatgaactcggtgagagtggccgtgagtg |
286 |
Q |
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| T |
27522395 |
tgatgcgagagtcgatatgctggcaaaaacaaagatgaatgtggaaatgaactcgatgagagtggccgtgagtg |
27522322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 27522265 - 27522148
Alignment:
| Q |
309 |
ttgtttcttcttttgatcaaagatccaacagtggttgctgttcatatgctagctcagtttgtataaaaattcatgagactcggatgaaacttctgtgtga |
408 |
Q |
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| T |
27522265 |
ttgtttcatcttttggtcaaagatccaacagtggttgttgttcatctgctagctcagtttgtataaaaattcatgagattcggatgaaacttctgtgtga |
27522166 |
T |
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| Q |
409 |
gatgtgttgacttgatgc |
426 |
Q |
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| T |
27522165 |
gatgtgttgacttgatgc |
27522148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 530
Target Start/End: Complemental strand, 27522071 - 27522025
Alignment:
| Q |
484 |
ggatacacaatacaacaatgagagaaaatgtattatatatgaaaatt |
530 |
Q |
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| T |
27522071 |
ggatatacaatacaacaatgagagaaaatgtattatatatgaaaatt |
27522025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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