View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_14 (Length: 570)
Name: NF10923_low_14
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 341 - 558
Target Start/End: Complemental strand, 10257681 - 10257462
Alignment:
| Q |
341 |
taccatcatttctaagaacatgaagagcaagaataagatcaccaggttgagcaacattgaccaaagaccatgtcaacaactcagtgctatgactgttaga |
440 |
Q |
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| T |
10257681 |
taccatcatttctaagaacatgaagagcaagaataagatcaccaggttgagcaacattgaccaaagaccatgtcaacaactcagtgctatgactgttaga |
10257582 |
T |
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| Q |
441 |
ttccatcttcacaccaaccaccacagtacggccaccggaggcaccattgtaggtggtgatcattttggtgatgacacgtggcagtatctatatatgtcaa |
540 |
Q |
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| T |
10257581 |
ttccatcttcacaccaacaaccacagtacggccaccggaggcaccgttgtaggtggtgatcattttgatgatgacacgtggcagtatctatatatatgaa |
10257482 |
T |
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| Q |
541 |
--agagagttggttgatgtc |
558 |
Q |
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| T |
10257481 |
tgagagagttggttgatgtc |
10257462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 10257889 - 10257780
Alignment:
| Q |
142 |
aaattctaacctgtttcaagttgcagaatccttcgtaaccagaaagcactgaatcaaatgctttgacgagagaaaataaagaagatttcccatctcgatt |
241 |
Q |
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| T |
10257889 |
aaattctaacctgtttcaagttgcagaatccttcgtaaccagaaagcactgaatcaaatgctttgacaagagaaaataaagaagatttcccatctcgatt |
10257790 |
T |
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| Q |
242 |
cacaatttct |
251 |
Q |
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| T |
10257789 |
cacaatttct |
10257780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 40376161 - 40376109
Alignment:
| Q |
354 |
aagaacatgaagagcaagaataagatcaccaggttgagcaacattgaccaaag |
406 |
Q |
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| T |
40376161 |
aagaacatgcagagcaactacaagatcaccaggttgagcaactttaaccaaag |
40376109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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