View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_17 (Length: 517)
Name: NF10923_low_17
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 49305419 - 49305919
Alignment:
| Q |
1 |
aacaaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaa |
100 |
Q |
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| T |
49305419 |
aacaaaatggaacaaaatcgcttaccatatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaa |
49305518 |
T |
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| Q |
101 |
atagaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaaagacaagagg |
200 |
Q |
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| T |
49305519 |
atagaataaacgtactgtaacattaacatgcatgattcctttttgatctcatcatcatcgaatagttagaaatataccaattcggagaaaagacaagagg |
49305618 |
T |
|
| Q |
201 |
gaaaaaagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatggagaaaaatgtagttaattagatagagactgttgaagtgcctgcaa |
300 |
Q |
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| T |
49305619 |
gaaaaaagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatggagaaaaatgtagttaattagatagagactgttgaagtgcctgcaa |
49305718 |
T |
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| Q |
301 |
cattgtctgttttccgaatctggttatgaaagaatgatatgaacgaatttgtaatccaccgaagcagtgcatttattccattgatatgtatgtgcatgca |
400 |
Q |
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| T |
49305719 |
cattgtctgttttccgaatctgattatgaaagaatgatatgaacgaatttgtaatccaccgaagcagtgcatttattccattgatatgtatgtgcatgca |
49305818 |
T |
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| Q |
401 |
ttttgactctcgttaactcagtgctagaatcacatattgcagaactgacttatcgttctattgatgggttgattcttaacctaattttctagataggtta |
500 |
Q |
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| T |
49305819 |
ttttgactctcgttaactcagtgctagaatcacatattgcagaactgacttatcgttctattgatgggttgattcttaacctaattttctagataggtta |
49305918 |
T |
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| Q |
501 |
g |
501 |
Q |
| |
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| T |
49305919 |
g |
49305919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 49298456 - 49298553
Alignment:
| Q |
28 |
tatatttatgaatacgagagtatgtatattgcgtatgtgattcgggtgcaagccgtgtgttgttgt----gttcaaaatagaataaacgtactgtaacat |
123 |
Q |
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| T |
49298456 |
tatatttatgaagacgatagtatgtgta--gcgtatgtgattcgggtgcaaaccgtttgttgttgttatgcttaaaaatagaataaacgcactgtaacat |
49298553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 49290655 - 49290718
Alignment:
| Q |
60 |
gtatgtgattcgggtgcaagccgtgtgttgttgtgttcaaaatagaataaacgtactgtaacat |
123 |
Q |
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| T |
49290655 |
gtatgtgattcgggtgcaaaccgtgtgttgttatgctggaaatagaataaacccactgtaacat |
49290718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 49298639 - 49298686
Alignment:
| Q |
206 |
aagaacaagtggagtatgaattcttaatcaaacgaagataaagaatatgg |
255 |
Q |
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| T |
49298639 |
aagaacaagtggagg--gaattcttaatcaaacgaagataaagaatatgg |
49298686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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