View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_18 (Length: 506)
Name: NF10923_low_18
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 24 - 489
Target Start/End: Original strand, 48453048 - 48453515
Alignment:
| Q |
24 |
gttatgtcagttaaatcaaataaacttatatcgatgaatgaaactnnnnnnncctaagcattttttctaaactaataacaaaaacttgtataactataca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453048 |
gttatgtcagttaaatcaaataaacttatatcgatgaatgaaactaaaaaaacctaagcattttttctaaactaataacaaaaacttgtataactataca |
48453147 |
T |
|
| Q |
124 |
cataaaatacttccaatgaaaacttgcaactccataaaggaatcaaatcaaaaggctatatttggaaagataatggagatacaagtgtaataaactcaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453148 |
cataaaatacttccaatgaaaacttgcaactccataaaggaatcaaatcaaaaggctatatttggaaagataatggagatacaagtgtaataaactcaat |
48453247 |
T |
|
| Q |
224 |
atgtattagaatattagcatgtttaaatgcaacgatcttgattgcatgattctccagctcaaaagtataacc--nnnnnnnnnnngaagaaggatcaaat |
321 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
48453248 |
atgtattagaatattaggatgtttaaatgcaacgatcttgattgcatgattctccagctcaaaagtataacctttttttttttttaaagaagtatcaaat |
48453347 |
T |
|
| Q |
322 |
gtataacttaatttacaaagttcttgctcaaagtcaggatgataaccacaaaaaataataataataaaaggtgtgcattaaccatgttcgctcaccataa |
421 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453348 |
gtataacttaatttacgaagttcttgctcaaagtcaggatgataaccacaaaaaataataataataaaaggtgtgcattaaccatgttcgctcaccataa |
48453447 |
T |
|
| Q |
422 |
ccgaaagtttctgcagaagaggagaaacttgtaggatgtttaaaatccagaaaagatgatgtccaaag |
489 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453448 |
ccaaaagtttctgcaaaagaggagaaacttgtaggatgtttaaaatccagaaaagatgatgtccaaag |
48453515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 477
Target Start/End: Complemental strand, 47929131 - 47929059
Alignment:
| Q |
405 |
atgttcgctcaccataaccgaaagtttctgcagaagaggagaaacttgtaggatgtttaaaatccagaaaaga |
477 |
Q |
| |
|
|||||| |||||||| || || ||||||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
47929131 |
atgttcactcaccatgacagagagtttctgcagaagaggagaagcttgaaggatgtttaaaatccacaaaaga |
47929059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 477
Target Start/End: Original strand, 47051333 - 47051406
Alignment:
| Q |
404 |
catgttcgctcaccataaccgaaagtttctgcagaagaggagaaacttgtaggatgtttaaaatccagaaaaga |
477 |
Q |
| |
|
||||||| |||||||| | ||||||||||||| |||||||||| |||| || |||||||||||||| |||||| |
|
|
| T |
47051333 |
catgttcactcaccatgattgaaagtttctgcaaaagaggagaagcttgaagcatgtttaaaatccacaaaaga |
47051406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 48107506 - 48107571
Alignment:
| Q |
405 |
atgttcgctcaccataaccgaaagtttctgcagaagaggagaaacttgtaggatgtttaaaatcca |
470 |
Q |
| |
|
|||||| |||||||| | ||||||||||||| || |||| ||||||| ||||||||||||||||| |
|
|
| T |
48107506 |
atgttcactcaccatggctgaaagtttctgcaaaaaaggacaaacttgaaggatgtttaaaatcca |
48107571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University