View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_19 (Length: 489)
Name: NF10923_low_19
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 28667660 - 28667182
Alignment:
| Q |
11 |
cacagacattcttaacaaacaaaatgggacttttagattcaaaggtccttctttcagcagccttaactgcatagtcacttctgatcctcgaaacctcgaa |
110 |
Q |
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| T |
28667660 |
cacagacattcttaacaaacaaaatgggacttttagattcaaaggtccttctttcagcagccttaactgcatagtcacttctgatcctcgaaacctcgaa |
28667561 |
T |
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| Q |
111 |
caccttctcaaaaccaaattcatcaactttcctaaaggaacttactttagaaacatggtaagggacttacttggagatggtatattcagtgcagatgatg |
210 |
Q |
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| T |
28667560 |
caccttctcaaaaccaaattcatcaactttcctaaaggaacttactttagaaacatggtaagggacttacttggagatggtatattcagtgcagatgatg |
28667461 |
T |
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| Q |
211 |
aaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaag |
310 |
Q |
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| T |
28667460 |
aaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaag |
28667361 |
T |
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| Q |
311 |
gcttttacctgttttagatgaatcagttgataaaagggctgtcacagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagct |
410 |
Q |
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| T |
28667360 |
gcttttacctgttttagatgaatcagttgataaaagggctgtcacagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagct |
28667261 |
T |
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| Q |
411 |
tttggtgttgatcctggttgtttgagtcaaaaacttcctgagataccatttgcaaaagcctttgaggatgcaacagaag |
489 |
Q |
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| T |
28667260 |
tttggtgttgatcctggttgtttgagtcaaaaacttcctgagataccatttgcaaaagcctttgaggatgcaacagaag |
28667182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 434
Target Start/End: Original strand, 13887047 - 13887304
Alignment:
| Q |
177 |
ttacttggagatggtatattcagtgcagatgatgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaa |
276 |
Q |
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||||||||||| ||||| ||| || |||| | |||| |||||| |||||||| ||||||||||| |||||||||||||| || ||||| || || |||| |
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| T |
13887047 |
ttacttggagacggtattttcgctgtagataacgaaacatggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaa |
13887146 |
T |
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| Q |
277 |
caactgattctttgtttgagcttgttcattcaaggcttttacctgttttagatgaatcagttg-ataaaagggctgtcacagatcttcaagacattcttt |
375 |
Q |
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| T |
13887147 |
caactgattcattgtttgagcttgtgaacaataggctcatacctgtcttagattcatc-gttgaagaaatcggtttccatcgatcttcaagatattttgt |
13887245 |
T |
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| Q |
376 |
taagactaacttttgacaatgtttgtatgatagcttttggtgttgatcctggttgtttg |
434 |
Q |
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| T |
13887246 |
tgagactaacttttgataatgtttgtatgatagcttttgatgttgatccttcttgtttg |
13887304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 13897978 - 13897901
Alignment:
| Q |
356 |
agatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttttggtgttgatcctggttgttt |
433 |
Q |
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| T |
13897978 |
agatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttgttt |
13897901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 7295947 - 7295907
Alignment:
| Q |
392 |
caatgtttgtatgatagcttttggtgttgatcctggttgtt |
432 |
Q |
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| T |
7295947 |
caatgtttgcatgatatcttttggtgttgatcctggttgtt |
7295907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 13898126 - 13898055
Alignment:
| Q |
208 |
atgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaa |
279 |
Q |
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| T |
13898126 |
atgaaacatggcagaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaa |
13898055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 177 - 430
Target Start/End: Complemental strand, 1035214 - 1034961
Alignment:
| Q |
177 |
ttacttggagatggtatattcagtgcagatgatgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaa |
276 |
Q |
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||||| ||||| ||||| |||| ||| || |||||| |||||| |||||||| |||| ||| || ||||||||||||||||| || || ||||| |||| |
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| T |
1035214 |
ttactcggagacggtattttcactgctgacaatgaaacatggcagaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaa |
1035115 |
T |
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| Q |
277 |
caactgattctttgtttgagcttgttcattcaaggcttttacctgttttagatgaatcagttgataaaagggctgtcacagatcttcaagacattctttt |
376 |
Q |
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||| ||| || | ||||||||||| | ||||| |||| || ||||| |||| | | |||| | || || |||||||||||| ||| | | |
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| T |
1035114 |
caaatgagtcaatttttgagcttgtgaacaataggctcataccagtcttagaattatcattgaagaaaaatgttgccatagatcttcaagatattttgct |
1035015 |
T |
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| Q |
377 |
aagactaacttttgacaatgtttgtatgatagcttttggtgttgatcctggttg |
430 |
Q |
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| T |
1035014 |
gagactaacttttgataatgtttgtatgatagcttttggtgttgatcctggttg |
1034961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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