View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_25 (Length: 452)
Name: NF10923_low_25
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 5663378 - 5662948
Alignment:
| Q |
24 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
123 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaa---agatgaa |
5663282 |
T |
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| Q |
124 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtaccaaat-tgacaggaaatggaggagaacgtgaagctaatgt--ctttaactac |
220 |
Q |
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| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttc |
5663182 |
T |
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| Q |
221 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctg |
320 |
Q |
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| T |
5663181 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaatacaattacctg |
5663082 |
T |
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| Q |
321 |
gatgcaattgtattgaataatcattcaaccgtgttctttcgttttattgagcacgg--atgggcgtatttgggcgaatttggaaatggatataaatgtag |
418 |
Q |
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| T |
5663081 |
gatgcacttgtatagaataatcattcaaccgtgtttttccgttttattgaacacggatatgggcgtatttgggcaaatttggaaatggatatagatgtag |
5662982 |
T |
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| Q |
419 |
aagcagaacccgagaggaagaagtggaagaatca |
452 |
Q |
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| T |
5662981 |
aagcagaacccgagaggaagaagtggaagaatca |
5662948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 135 - 452
Target Start/End: Complemental strand, 52131504 - 52131190
Alignment:
| Q |
135 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
232 |
Q |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
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| Q |
233 |
accatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgta |
332 |
Q |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgcacttgta |
52131309 |
T |
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| Q |
333 |
ttgaataatcattcaaccgtgttctttcgttttattgagcacggatgggcgtatttgggcgaatttggaaatggatataaatgtagaagcagaacccgag |
432 |
Q |
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| T |
52131308 |
ttgaataatcattcaaccgtgttc-ttcgttttactgaacacggatgggcgtatttgggcgaatttggatatggatatagatgtagaagcataacccgag |
52131210 |
T |
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| Q |
433 |
aggaagaagtggaagaatca |
452 |
Q |
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| T |
52131209 |
aggaagaagtggaagaatca |
52131190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 223 - 452
Target Start/End: Original strand, 11649155 - 11649374
Alignment:
| Q |
223 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
322 |
Q |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
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| Q |
323 |
tgcaattgtattgaataatcattcaaccgtgttctttcgttttattgagcacggatgggcgtatttgggcgaatttggaaatggatataaatgtagaagc |
422 |
Q |
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| T |
11649255 |
tgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaacacggatgggcgt----------atttggatatggatatagatgtagaagc |
11649344 |
T |
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| Q |
423 |
agaacccgagaggaagaagtggaagaatca |
452 |
Q |
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| T |
11649345 |
agaacccgagaggaagaagtggaagaatca |
11649374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 168 - 386
Target Start/End: Complemental strand, 22007884 - 22007660
Alignment:
| Q |
168 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
261 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
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| Q |
262 |
gaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctttcg |
361 |
Q |
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||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||| | |
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| T |
22007784 |
gaagtcgaagcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttcttcct |
22007685 |
T |
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| Q |
362 |
ttttattgagcacggatgggcgtat |
386 |
Q |
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||||| ||| ||| || |||||||| |
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| T |
22007684 |
ttttactgaacacagaggggcgtat |
22007660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 22007612 - 22007574
Alignment:
| Q |
413 |
atgtagaagcagaacccgagaggaagaagtggaagaatc |
451 |
Q |
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| T |
22007612 |
atgtagaagcggaagccgagaggaagaagtggaagaatc |
22007574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
135 |
ccaaggcagcagaacataactactggctcgtgag |
168 |
Q |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 14231304 - 14231223
Alignment:
| Q |
275 |
gatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctt |
358 |
Q |
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| T |
14231304 |
gatacaccgccaacaataaatctagtcttcctaatattattatctggatgcacctgtattgaat--tcattcaaccgtgttctt |
14231223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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