View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_26 (Length: 443)
Name: NF10923_low_26
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 38484112 - 38484533
Alignment:
| Q |
7 |
gaagcagagaaaccacgacaaagaatggtctgttgaagctaataagaggttgataatttttcttaaagtttgttttctttttgttattccggagcttatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484112 |
gaagcagagaaaccacgacaaagaatggtctgttgaagctaataagaggttgatagtttttcttaaagtttgttttctttttgttattccggagcttatt |
38484211 |
T |
|
| Q |
107 |
gctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggagaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484212 |
gctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggtttcagaggagaattt |
38484311 |
T |
|
| Q |
207 |
atgttggtcgtggattgagacaaggtcttgtagatagtgttaagtatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttacttttt |
306 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484312 |
acgttggtcgtggattgagacaaggtcttgtagatagtgttaaatatactttgttttgggttgtggtgttggtttcaaaatttagtttcagttacttttt |
38484411 |
T |
|
| Q |
307 |
acagattaaacctatgattgctccatcaagagcagtattggatcttaaggatattgattaccattggcatgagttttttcaaaaaggtcatagcattttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484412 |
acagattaaacctatgattgctccatcaagagcagtattggatcttaaggatattgattatcattggcatgagttttttcaaaaaggtcatagcattttt |
38484511 |
T |
|
| Q |
407 |
gctattgggctactgtggattc |
428 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38484512 |
gctattgggctactgtggattc |
38484533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 384
Target Start/End: Original strand, 30118596 - 30118888
Alignment:
| Q |
92 |
attccggagcttattgctttggcactttttatactaccttggattagaaattttatggagaaaagaaattggaggattatttatatgttcacatggtggt |
191 |
Q |
| |
|
||||||||| || | ||||| || || |||||||| |||||||||||||| ||| ||||||| | ||| |||||||| |||| ||| | | ||||||| |
|
|
| T |
30118596 |
attccggaggttctggctttagccctgtttatacttccttggattagaaactttgtggagaatacaaactggaggatcttttacatgctgtcgtggtggt |
30118695 |
T |
|
| Q |
192 |
ttcagaggagaatttatgttggtcgtggattgagacaaggtcttgtagatagtgttaagtatactttgttttgggttgtggtgttggtttcaaaatttag |
291 |
Q |
| |
|
||||||| |||| | ||||||||| || |||||| |||| ||| || | |||||||| | ||||| |||||| | ||| ||| |||||||| | |
|
|
| T |
30118696 |
ttcagagcagaagctttgttggtcggggtttgagagaagggctttatgacaacattaagtattcattgttctgggttttcgtgctggcaacaaaattttg |
30118795 |
T |
|
| Q |
292 |
tttcagttactttttacagattaaacctatgattgctccatcaagagcagtattggatcttaaggatattgattaccattggcatgagttttt |
384 |
Q |
| |
|
|| ||||||||||| ||| | ||||| |||||||| ||| ||| ||||| ||||| || ||| || |||| || | |||||||||||||| |
|
|
| T |
30118796 |
ctttagttactttttgcaggtcaaacccatgattgccccaacaaaggcagtgttggacctcaagaatgttgagtatgaatggcatgagttttt |
30118888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University