View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_27 (Length: 435)
Name: NF10923_low_27
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 36821475 - 36821887
Alignment:
| Q |
8 |
agcacagacaccgtacacgacacggacattggtaaaaagtttaagaaatgaattaattgaacactgtcagtgttgtttcattgttggacaccgcgacatg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36821475 |
agcatagacaccgtacacgacacggacattggtaaaaagtttaagaaatgaattaattgaacactgtcagtgttgtttcattgttggacaccgcgacatg |
36821574 |
T |
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| Q |
108 |
ccttccatcacaa-gtgtcggtgctacagagtctgatatagtttgatacggacaccagtgataatttgataaaaaggaaatcattaaatggaatctcaat |
206 |
Q |
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| T |
36821575 |
ccttccatcacaaagtgtcggtgctacagagtctgatatagtttgatacggacaccagtgataatttgataaaaaggaaatcattaaatggaatctcaat |
36821674 |
T |
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| Q |
207 |
ctcatgtatatgtgtcgtatcggtgtcctatactgacgcgtgtttaaggccaaacgtgcctttaaatctgaagtgtctgtgatacatagctatagagttc |
306 |
Q |
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| T |
36821675 |
ctcatgtatatgtgtcgtatcggtgtcctatactgacgcgtgtttaaggccaaacgtgcctttaaatctgaagtgtctgtgatacatagctatagagttc |
36821774 |
T |
|
| Q |
307 |
aatcgagacaaatttaggttgttttgacaccgcacatgccctaattatgtgtttgctatcatgatagaaagtgtcagaactgattatgcctctatctaat |
406 |
Q |
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| T |
36821775 |
aatcgagacaaatttaggttgttttgacaccgcacatgccctaattatgtgtttgctatcatgatagaaagtgtcagaactgattatgcctctatctaat |
36821874 |
T |
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| Q |
407 |
gccatgaagaagc |
419 |
Q |
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| T |
36821875 |
gccatgaagaagc |
36821887 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 4149949 - 4150035
Alignment:
| Q |
275 |
tgaagtgtctgtgatacatagctatagagttcaatcgagacaaatttaggttgttttgacaccgcacatgccctaattatgtgtttg |
361 |
Q |
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| T |
4149949 |
tgaagtgttagtgttacataactatagagttcatttgggacaaatgtatgatgtttggacaccaaacatgcccttattatgtgtttg |
4150035 |
T |
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