View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_low_29 (Length: 428)

Name: NF10923_low_29
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_low_29
NF10923_low_29
[»] chr4 (13 HSPs)
chr4 (18-418)||(19457842-19458245)
chr4 (21-414)||(19460428-19460823)
chr4 (88-418)||(19456127-19456463)
chr4 (18-405)||(19459546-19459946)
chr4 (114-261)||(9167023-9167170)
chr4 (126-261)||(13518139-13518274)
chr4 (114-261)||(15017810-15017957)
chr4 (114-261)||(15019450-15019597)
chr4 (118-261)||(39488321-39488464)
chr4 (98-191)||(24663566-24663659)
chr4 (98-191)||(21484605-21484698)
chr4 (21-77)||(19456481-19456537)
chr4 (98-226)||(22474101-22474229)
[»] chr7 (5 HSPs)
chr7 (114-261)||(9595603-9595750)
chr7 (114-261)||(9646566-9646713)
chr7 (118-261)||(7843046-7843189)
chr7 (126-261)||(9647114-9647249)
chr7 (126-191)||(9596151-9596216)
[»] chr1 (4 HSPs)
chr1 (114-261)||(24157221-24157368)
chr1 (114-261)||(20190597-20190744)
chr1 (114-261)||(36233675-36233822)
chr1 (198-261)||(20189048-20189111)
[»] chr5 (4 HSPs)
chr5 (114-261)||(244608-244755)
chr5 (114-261)||(29949954-29950101)
chr5 (114-261)||(29951592-29951739)
chr5 (18-207)||(27401974-27402160)
[»] chr8 (1 HSPs)
chr8 (114-261)||(8366477-8366624)
[»] chr2 (1 HSPs)
chr2 (114-261)||(22300063-22300210)
[»] scaffold0269 (1 HSPs)
scaffold0269 (119-261)||(1575-1717)
[»] chr3 (3 HSPs)
chr3 (196-261)||(25532006-25532071)
chr3 (158-222)||(2693788-2693852)
chr3 (162-228)||(2683933-2683996)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 19458245 - 19457842
Alignment:
Q  18 tttataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattcacac--agtta-actttttagcttaattcatctcccttata 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||||||||||||||||||||||    
T  19458245 tttataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattcacacaaagttattttttttagcttaattcatctcccttata 19458146  T
Q  115 tatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataat 214  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19458145 tatcattttcatgctctatttatatgagcctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattccaataat 19458046  T
Q  215 gttttggtggctgattagtgcaaagaaaaggttacaaaatgactctccaatgtgggtgcatggagaggttacacattcatttgctcctttaattatcatg 314  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19458045 gttttagtggctgattagtgcaaagaaaaggttacaaaatgaatctccaatgtgggtgcatggagaggttacacattcatttgctcctttaattatcatg 19457946  T
Q  315 attgaatagtttctaagacattacacttttataattcatctccatccaacctccattgtgcttctttaatgtgatgtttcttctcttacataagctcatt 414  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457945 attgaatagtttctaagacgttacacttttataattcagctccatccaacctccattgtgcttctttaatgtgatgtttcttctcttacataagctcatt 19457846  T
Q  415 catc 418  Q
    ||||    
T  19457845 catc 19457842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 21 - 414
Target Start/End: Original strand, 19460428 - 19460823
Alignment:
Q  21 ataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattcacaca--gttaactttttagcttaattcatctcccttatatatc 118  Q
    ||||||||||| ||||||| |||||| || |||||| ||||||| ||||||||||||||||  || |  |||||| |||||| || |||||||| ||||     
T  19460428 ataagatcaaaacatggttcaattcagaaccataaataagcaaaactcccaaattcacacaaagtgatttttttaacttaatccacctcccttacatata 19460527  T
Q  119 attttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttt 218  Q
    ||||   |||||| || |||||||      ||||||||||||||||||||| |||||| |||||||||| ||| || ||||||||||| |||||||||||    
T  19460528 atttctgtgctctgttaatatgag------acatgatgattttgattctaaaactctttgaaaatgaaatgaaatgcagccactaattacaataatgttt 19460621  T
Q  219 tggtggctgattagtgcaaagaaaaggttacaaaatgactctccaatgtggg---------tgcatggagaggttacacattcatttgctcctttaatta 309  Q
    |||||| |||||| |||||| ||||  ||||||||||||||||||| || ||         |||||| |||||||||||||||||||||| |||||||||    
T  19460622 tggtggttgattaatgcaaaaaaaa--ttacaaaatgactctccaaggtaggcttcatcaatgcatgaagaggttacacattcatttgcttctttaatta 19460719  T
Q  310 tcatgattgaatagtttctaagacattacacttttataattcatctccatccaacctccattgtgcttctttaatgtgatgtttcttctcttacataagc 409  Q
    |||||  |||||||||| |||||| ||||||||| |||||||| || |||| || ||||||| ||||||||||||||||||||||||||||||||| | |    
T  19460720 tcatggctgaatagttt-taagacgttacactttcataattcagctgcatctaatctccattatgcttctttaatgtgatgtttcttctcttacatcatc 19460818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 88 - 418
Target Start/End: Complemental strand, 19456463 - 19456127
Alignment:
Q  88 tttttagcttaattcatctcccttatatatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaa 187  Q
    |||||| |||||||||||||||||| |||||||| || |||||||||||||||||  ||||| || ||   |||| |||||| ||||||||||| |||||    
T  19456463 tttttaacttaattcatctcccttacatatcattgtcgtgctctatttatatgagcttattatataat---tttggttctaaaactcttagaaa-tgaaa 19456368  T
Q  188 ggaagtgtagccactaattgcaataatgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctccaatgtgggtg------------cat 275  Q
    |||| || | | |||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||| |||||||            |||    
T  19456367 ggaaatgcatctactaattgcaataatgttttgg-gactgattagtgcaaagaaaatgttacataatgactctccaaggtgggtggcttcatcaatgcat 19456269  T
Q  276 ggagaggttacacattcatttgctcctttaattatcatgattgaatagtttctaagacattacacttttataattcatctccatccaacctccattgtgc 375  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||| | ||||||| |||||||| |||| || ||||||||||||||    
T  19456268 ggagaggttacacattcatttgctcctttaataatcatggctgaatagtttc-aagacttcacactttcataattcagctccgtctaacctccattgtgc 19456170  T
Q  376 ttctttaatgtgatgtttcttctcttacataagctcattcatc 418  Q
     ||||||||||||||||||||||||||||| || |||||||||    
T  19456169 atctttaatgtgatgtttcttctcttacatcagttcattcatc 19456127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 19459946 - 19459546
Alignment:
Q  18 tttataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattcacaca--gttaacttttt-agcttaattcatctcccttata 114  Q
    |||||||||||||||  ||||| |||| | || |||| | ||||||||||||||||||||||||  || |  ||||| |||||||||||||||||||  |    
T  19459946 tttataagatcaaagtttggttcaatttagaaccatagataagcaaagctcccaaattcacacaaagtgattttttttagcttaattcatctcccttgca 19459847  T
Q  115 tatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataat 214  Q
    |||||||||| ||| ||||||||||||   ||||||||||| ||||||||||||| ||||||||||||||||||||| || | ||| |||||||||||||    
T  19459846 tatcattttcgtgcactatttatatgaacatattacatgattattttgattctaaaactcttagaaaatgaaaggaaatgcatccattaattgcaataat 19459747  T
Q  215 gttttggtggctgattagtgcaaagaaaaggttacaaaatgactctccaatgtggg------------tgcatggagaggttacacattcatttgctcct 302  Q
    |||||||||| | ||||||||||||||||||||| |||| |||||||||| |||||            ||| | ||||||||||||||| || ||||||     
T  19459746 gttttggtggttaattagtgcaaagaaaaggttataaaacgactctccaaggtgggtggcttcatcaatgcctcgagaggttacacattaatatgctcc- 19459648  T
Q  303 ttaattatcatgattgaatagtttctaagacattacacttttataattcatctccatccaacctccattgtgcttctttaatgtgatgtttcttctctta 402  Q
    ||| ||| ||||  ||||||||||| ||||  ||||| ||| |||||| | ||| |||  | ||||||||||||||||||||||||| ||||||||||||    
T  19459647 ttacttaacatggatgaatagtttc-aagatgttacaatttcataatttagctcaatctgatctccattgtgcttctttaatgtgatctttcttctctta 19459549  T
Q  403 cat 405  Q
    |||    
T  19459548 cat 19459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 9167170 - 9167023
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| |  | ||||||||| ||||||    
T  9167170 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatccaaccactaattacaataa 9167071  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  9167070 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 9167023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 126 - 261
Target Start/End: Original strand, 13518139 - 13518274
Alignment:
Q  126 tgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttttggtggc 225  Q
    |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||    
T  13518139 tgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggtggc 13518238  T
Q  226 tgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||| |||||| ||||||||||||||||||||||    
T  13518239 tgattaatgcaaataaaaggttacaaaatgactctc 13518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 15017810 - 15017957
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||| || || | ||||||||| ||||||    
T  15017810 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagaaaatgcaaccactaattacaataa 15017909  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  15017910 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 15017957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 15019450 - 15019597
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||| ||||||    
T  15019450 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa 15019549  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  15019550 tgttttggtggctgattaatgcaaatgaaatgttacaaaatgactctc 15019597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 39488321 - 39488464
Alignment:
Q  118 cattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgtt 217  Q
    ||||||| |||||||| ||||||||  ||||||||| ||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||||||    
T  39488321 cattttcgtgctctatctatatgagcatattacatgttgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgtt 39488420  T
Q  218 ttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||| |||||| || |||||||||||||||||||    
T  39488421 ttggtggctgattaatgcaaataagaggttacaaaatgactctc 39488464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 24663566 - 24663659
Alignment:
Q  98 aattcatctcccttatatatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaa 191  Q
    ||||||||| |||||  |||||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  24663566 aattcatctgccttacgtatcattttcgtgctctatttatatgattttattacatgatgattttgattctaaaactcttagaaaataaaaggaa 24663659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 21484605 - 21484698
Alignment:
Q  98 aattcatctcccttatatatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaa 191  Q
    ||||||||| ||||| ||||||||||  |  | |||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  21484605 aattcatctgccttacatatcatttttgtattgtatttatatgcgtttattacatgatgattttgattctaaaactcttacaaaatgaaaggaa 21484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 19456537 - 19456481
Alignment:
Q  21 ataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattca 77  Q
    |||||||||||||||| || ||| || || |||||||||||||| ||| ||||||||    
T  19456537 ataagatcaaagcatgattcaatccagaaccataaagaagcaaaactctcaaattca 19456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 22474229 - 22474101
Alignment:
Q  98 aattcatctcccttatatatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtag 197  Q
    |||||||||| | || ||||||||||| ||||||||||||||||    |||||| |||  || | ||||| | ||||| ||||||| ||||||| || |     
T  22474229 aattcatctctcatacatatcattttcgtgctctatttatatgaactcattacaagatagttctaattctgaaactctaagaaaataaaaggaaatgcaa 22474130  T
Q  198 ccactaattgcaataatgttttggtggct 226  Q
    ||| |||||   | |||||||||||||||    
T  22474129 ccattaattatcacaatgttttggtggct 22474101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 9595603 - 9595750
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||    
T  9595603 atatcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataa 9595702  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  9595703 tgttttggtggctgattaattcaaataaaagtttacaaaatgactctc 9595750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 9646566 - 9646713
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||    
T  9646566 atatcattttcgtgctctatttatatgagtttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataa 9646665  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  9646666 tgttttggtggctgattaattcaaataaaagtttacaaaatgactctc 9646713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 7843189 - 7843046
Alignment:
Q  118 cattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgtt 217  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||| || || ||||||||||||||||||||| || ||||||||||| ||||||||||    
T  7843189 cattttcgtgctctatttatatgagcttattacatgatgattttgactcaaaaactcttagaaaatgaaaggaaatgcagccactaattacaataatgtt 7843090  T
Q  218 ttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  7843089 ttggtggctgattaatgcaaataaaaggttacaaaatgactctc 7843046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 126 - 261
Target Start/End: Original strand, 9647114 - 9647249
Alignment:
Q  126 tgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttttggtggc 225  Q
    |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||    
T  9647114 tgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataattttttggtggc 9647213  T
Q  226 tgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||| |||||| ||||||||||||||||||||||    
T  9647214 tgattaatgcaaataaaaggttacaaaatgactctc 9647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 9596151 - 9596216
Alignment:
Q  126 tgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaa 191  Q
    |||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  9596151 tgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaa 9596216  T

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Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 24157221 - 24157368
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||| || || ||||||||||| ||||||    
T  24157221 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaagcaaatgcagccactaattacaataa 24157320  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  24157321 tgttttggtggctgattaatgcaaataaaaggttacaaaatgactctc 24157368  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 20190597 - 20190744
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||    
T  20190597 atatcattttcgtgatctatttatatgaggttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataa 20190696  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    || ||||||||||||||| |||||| ||||| ||||||||||||||||    
T  20190697 tgatttggtggctgattaatgcaaataaaagattacaaaatgactctc 20190744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 36233822 - 36233675
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||| | ||||| ||||||||||||||||||||| || | ||||||||| ||||||    
T  36233822 atatcattttcgtgctctatttatatgagcttattacatgatgattttcactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa 36233723  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  36233722 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 36233675  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 20189048 - 20189111
Alignment:
Q  198 ccactaattgcaataatgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  20189048 ccactaattacaataatgttttggtggctgattaatgcaaataaaaggttacaaaatgactctc 20189111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 244608 - 244755
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||| ||||||    
T  244608 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa 244707  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  244708 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 244755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 29950101 - 29949954
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||| ||||||    
T  29950101 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa 29950002  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  29950001 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 29949954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 29951739 - 29951592
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||| ||||||    
T  29951739 atatcattttcgtgctctatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcaaccactaattacaataa 29951640  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||    
T  29951639 tgttttggtggctgattaatgcaaataaaatgttacaaaatgactctc 29951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 27402160 - 27401974
Alignment:
Q  18 tttataagatcaaagcatggttaaattcaaaatcataaagaagcaaagctcccaaattcacacagttaactttttagcttaattcatctcccttatatat 117  Q
    ||||||||||||| |||||||| |||| | ||  | |||||||||||||||| |||||||   | ||   |||  | |||| |||||||  |||  ||||    
T  27402160 tttataagatcaacgcatggttcaatttagaacaaaaaagaagcaaagctccaaaattcagtgattt---tttaaaacttacttcatctgtctttcatat 27402064  T
Q  118 cattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattg 207  Q
    ||||||  |||||| |||||||| |   |||||| ||||  ||||||||||| ||||| |||||||||||  || || ||||||||||||    
T  27402063 catttttgtgctctttttatatgggctaattacaagatggctttgattctaaaactctcagaaaatgaaaataaatgcagccactaattg 27401974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 8366624 - 8366477
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  |||||||||| || ||||| ||||| ||||||||||||||||||||| || ||||||||||| ||||||    
T  8366624 atatcattttcgtgctctatttatatgagcttattacatgaggactttgactctaaaactcttagaaaatgaaaggaaatgcagccactaattacaataa 8366525  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| || |||||||||||||||||||    
T  8366524 tgttttggtggctgattaatgcaaataagaggttacaaaatgactctc 8366477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 22300063 - 22300210
Alignment:
Q  114 atatcattttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataa 213  Q
    ||||||||||| |||||||||||||||||  ||||||||||||| ||||| ||||| ||||||||||||||||||||| || ||||| ||||| ||||||    
T  22300063 atatcattttcgtgctctatttatatgagcttattacatgatgactttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataa 22300162  T
Q  214 tgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    |||||||||||||||||| |||||| || |||||||||||||||||||    
T  22300163 tgttttggtggctgattaatgcaaataagaggttacaaaatgactctc 22300210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 1575 - 1717
Alignment:
Q  119 attttcatgctctatttatatgagtctattacatgatgattttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttt 218  Q
    |||||| |||| ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||| ||||| |||||||||||    
T  1575 attttcgtgctatatttatatgagcttattacatgatgattttgactctaaaactcttagaaaatgaaaggaaatgcagccattaattacaataatgttt 1674  T
Q  219 tggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    ||||||||||||| |||||| || |||||||||||||||||||    
T  1675 tggtggctgattaatgcaaataagaggttacaaaatgactctc 1717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 25532071 - 25532006
Alignment:
Q  196 agccactaattgcaataatgttttggtggctgattagtgcaaagaaaaggttacaaaatgactctc 261  Q
    ||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  25532071 agccactaattacaataatgttttggtggctgattaatgcaaataagaggttacaaaatgactctc 25532006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 2693852 - 2693788
Alignment:
Q  158 ttttgattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttttggt 222  Q
    |||||||||| | ||||||||||||| |||| || || | |||||||||||||| ||||||||||    
T  2693852 ttttgattctgaaactcttagaaaataaaagtaaatgcaaccactaattgcaattatgttttggt 2693788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 2683996 - 2683933
Alignment:
Q  162 gattctaacactcttagaaaatgaaaggaagtgtagccactaattgcaataatgttttggtggctga 228  Q
    |||||| | |||||||||||||||| |||| || |||   ||||| |||||||||||||||||||||    
T  2683996 gattctgaaactcttagaaaatgaacggaaatgcagc---taatttcaataatgttttggtggctga 2683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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