View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_32 (Length: 415)
Name: NF10923_low_32
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 39295679 - 39296075
Alignment:
| Q |
1 |
agcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcacttctgtgac |
100 |
Q |
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| T |
39295679 |
agcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcacttctgtgac |
39295778 |
T |
|
| Q |
101 |
atcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagagagagttgaggtactaccaaagtctgaca |
200 |
Q |
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| T |
39295779 |
atcaacattgatgctgacgatgatgagtatgaatttctagctcaagttcaggacatggaaaataaccaagagaaagttgaggtactaccaaagtctgaca |
39295878 |
T |
|
| Q |
201 |
taccaacaaaaaatttgaggttgtcgattattctgctggatcaaggttgcacagtgtacaaaggactgttcttggtttgcataaccttgaatatgttagc |
300 |
Q |
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| T |
39295879 |
taccaacaaaaaattcgaggttgtcgattattctgctggatcaaggttgcacagtgtacaaaggactgttcttggtttgcataaccttgaatatgttagc |
39295978 |
T |
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| Q |
301 |
acttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacattctagctttaacactatgtcgaagc |
397 |
Q |
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| T |
39295979 |
acttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacatcctagctttaacactatgtcgaagc |
39296075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 74 - 396
Target Start/End: Original strand, 39288869 - 39289191
Alignment:
| Q |
74 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagaga |
173 |
Q |
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| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
39288968 |
T |
|
| Q |
174 |
gagttgaggtactaccaaagtctgacataccaacaaaaaatttgaggttgtcgattattctgctggatcaaggttgcacagtgtacaaaggactgttctt |
273 |
Q |
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|||| ||||||||||||| | || ||||| || || | |||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||| |
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| T |
39288969 |
aagttaaggtactaccaaaaacagaaccaccaaaaaggaagtcaaggttgtctattattctgctagatcaaggtttcacagtttacaaaggactattctt |
39289068 |
T |
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| Q |
274 |
ggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacatt |
373 |
Q |
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| T |
39289069 |
ggtttgcataaccttgaatatgttagcacttgctctttcagctttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacatt |
39289168 |
T |
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| Q |
374 |
ctagctttaacactatgtcgaag |
396 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39289169 |
ctagctttaacactatgtcgaag |
39289191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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