View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_low_33 (Length: 412)

Name: NF10923_low_33
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_low_33
NF10923_low_33
[»] chr7 (6 HSPs)
chr7 (2-408)||(29763250-29763670)
chr7 (370-412)||(1433399-1433441)
chr7 (370-412)||(9778453-9778495)
chr7 (370-412)||(13300363-13300405)
chr7 (371-412)||(21141054-21141095)
chr7 (370-410)||(33384650-33384690)
[»] chr8 (2 HSPs)
chr8 (369-412)||(926860-926903)
chr8 (370-412)||(20785531-20785573)
[»] chr3 (6 HSPs)
chr3 (370-412)||(7171447-7171489)
chr3 (370-412)||(10318112-10318154)
chr3 (370-412)||(10335358-10335400)
chr3 (369-409)||(16000091-16000131)
chr3 (370-412)||(750691-750733)
chr3 (370-412)||(14027960-14028002)
[»] chr6 (2 HSPs)
chr6 (370-409)||(1681703-1681742)
chr6 (372-412)||(403946-403986)
[»] chr4 (1 HSPs)
chr4 (370-409)||(19482613-19482652)
[»] chr5 (3 HSPs)
chr5 (370-412)||(15382422-15382464)
chr5 (370-412)||(32767007-32767049)
chr5 (222-271)||(28555390-28555439)
[»] chr2 (1 HSPs)
chr2 (370-412)||(18631471-18631513)
[»] chr1 (2 HSPs)
chr1 (370-412)||(10577807-10577849)
chr1 (369-409)||(3490459-3490499)
[»] scaffold0652 (1 HSPs)
scaffold0652 (371-412)||(534-575)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 29763670 - 29763250
Alignment:
Q  2 gagatgaatattaagtatttgttgcaaaatataaaaatttaaagaccccctttcttatttttcttccaacaaaattgttagcatgtgtttggt------- 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||           
T  29763670 gagatgaatattaagtatttgttgcaaaatataaaaatttaaagaccc--tttcttatttttcttccaacaaaattgttagcatgtgtttggttttacgg 29763573  T
Q  95 ----gtatatcataatagattttgccttatctaacttcatttcagtgaatcaagtagtttaatttaattggttaatgaatttcagttaaagaaaaaacgt 190  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  29763572 tagcgtatatcataatagattttgccttatctaacttcatttcagtgaatcaagtagtttaacttaattg-ttaatgaatttcagttaaagaaaaaacgt 29763474  T
Q  191 ttaggaaaatcctagtaaaaatcatgactagaacaatcattagtcagactttatttatctttcgatcgaattctagattacgatggtctatattccctag 290  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29763473 ttaggaaaatcctagaaaaaatcatgactataacagtcattagtcagactttatttatctttcgatcgaattctagattacgatggtctatattccttag 29763374  T
Q  291 gaaccaaggcaactttgac------nnnnnnnncatgattttggtgaaaaggatttaacatactaaattattttctctcagaagttatgaagcacggata 384  Q
    |||||||||||||||||||              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  29763373 gaaccaaggcaactttgacaaaaaaaaaaaaaacatgattttggtgaaaaggatttaacatattaaattattttctctcagaagttatgaagtacggata 29763274  T
Q  385 cgaacacagacaccgaacacgaca 408  Q
    ||||||||||||||||||||||||    
T  29763273 cgaacacagacaccgaacacgaca 29763250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 1433399 - 1433441
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  1433399 tatgaagcacggatacgggcacggacaccgaacacgacacgga 1433441  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 9778453 - 9778495
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  9778453 tatgaagcacggatacggacacggacaccggacacgacacgga 9778495  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 13300363 - 13300405
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||    
T  13300363 tatgaagcagggatatgaacacggacaccgaacacgacacgga 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 21141095 - 21141054
Alignment:
Q  371 atgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||| |||| ||||||| ||||||||||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacgacacgga 21141054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 33384690 - 33384650
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacg 410  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  33384690 tatgaagcacggatacgaatacagacactggacacgacacg 33384650  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 926903 - 926860
Alignment:
Q  369 ttatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  926903 ttatgaagcacggatacgaacacggacaccggacacgacacgga 926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 20785573 - 20785531
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  20785573 tatgaagcacggatacggacacggacaccgtacacgacacgga 20785531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 7171447 - 7171489
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  7171447 tatgaagcacggatacggacacagacaccggacacgacacgga 7171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 10318154 - 10318112
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  10318154 tatgaagcacggatacgaacacggacaccggacacgacacgga 10318112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 10335400 - 10335358
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  10335400 tatgaagcacggatacgaacacggacaccggacacgacacgga 10335358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 16000131 - 16000091
Alignment:
Q  369 ttatgaagcacggatacgaacacagacaccgaacacgacac 409  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  16000131 ttatgaagcacggatacggacacggacaccgaacacgacac 16000091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 750733 - 750691
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  750733 tatgaagcacggatacggacacggacaccggacacgacacgga 750691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 14027960 - 14028002
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  14027960 tatgaagcacggatacggacacggacaccggacacgacacgga 14028002  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 1681703 - 1681742
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacac 409  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  1681703 tatgaagcacggatacagacacagacaccgaacacgacac 1681742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 403986 - 403946
Alignment:
Q  372 tgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  403986 tgaagcacggatacagacacagataccgaacacgacacgga 403946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 19482613 - 19482652
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacac 409  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  19482613 tatgaagcacggatacgaacacagacaccagacacgacac 19482652  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 15382422 - 15382464
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  15382422 tatgaagcacggatacggacacggacaccggacacgacacgga 15382464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 32767049 - 32767007
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||| ||||||||||| | ||||||||||||    
T  32767049 tatgaagcacggatacaaacacagacactggacacgacacgga 32767007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 28555390 - 28555439
Alignment:
Q  222 aacaatcattagtcagactttatttatctttcgatcgaattctagattac 271  Q
    |||||| ||| |||||||||||||||| ||||||||||| |||| |||||    
T  28555390 aacaataattggtcagactttatttatttttcgatcgaactctatattac 28555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 18631513 - 18631471
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||    
T  18631513 tatgaagcacagatacgaacacggacaccggacacgacacgga 18631471  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 10577849 - 10577807
Alignment:
Q  370 tatgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  10577849 tatgaagcacggatacggacacggacaccggacacgacacgga 10577807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 3490499 - 3490459
Alignment:
Q  369 ttatgaagcacggatacgaacacagacaccgaacacgacac 409  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  3490499 ttatgaagcacggatacggatacagacaccggacacgacac 3490459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 575 - 534
Alignment:
Q  371 atgaagcacggatacgaacacagacaccgaacacgacacgga 412  Q
    |||||||||||||||| |||| ||||||||||||| ||||||    
T  575 atgaagcacggatacggacacggacaccgaacacgccacgga 534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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