View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_36 (Length: 348)
Name: NF10923_low_36
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 337
Target Start/End: Original strand, 50820137 - 50820463
Alignment:
| Q |
22 |
aattgtacactccagaaaaatagatagaaaataaaataaatgaatcagtgagtttacattattgaatcttaattgacatggtttgaccaagaaataagaa |
121 |
Q |
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| T |
50820137 |
aattgtacactccagaaaaatagatagaaaataaaataaatgaatcagtgagtttacattattgaatcttaattgacatggtttgaccaagaaataagaa |
50820236 |
T |
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| Q |
122 |
agtttaaaacagttgaatgaatgcaagt-----aaagtgtagtgatatttgatgagttcatttcctaagctcataccttgattttgtgctgaataaacct |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50820237 |
agtttaaaacagttgaatgaatgcaagtaaagtaaagtgtagtgttatttgatgagttcatttcctaagctcataccttgattttgtgctgaataaacct |
50820336 |
T |
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| Q |
217 |
aattcaaatgtttgagtaaagaaaagcgcgagatccgcatatgtgaatatgaaagagaaaagagcagaaactaa------ccagctccaggtgttaaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
50820337 |
aattcaaatgtttgagtaaagaaaagcgcgagatccgcatatgtgaatttgaaagagaaaagagcagaaactcaccagctccagctccaggtgttaaaca |
50820436 |
T |
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| Q |
311 |
ctcatacctattcaccaccatattcat |
337 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50820437 |
ctcatacctattcaccaccatattcat |
50820463 |
T |
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