View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_39 (Length: 343)
Name: NF10923_low_39
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 36366829 - 36366536
Alignment:
| Q |
16 |
caattttacactttttatatgttagcacttactatatgtgagttttaccattaaactctttagnnnnnnnnnnnnnnnnnnnntttgtagagaggcattg |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36366829 |
caattttacacttcttatatgttagcactaactatatgtgagttttaccattaaactctttaggaaaaaagaagaagaaattttttgtagagaggcattg |
36366730 |
T |
|
| Q |
116 |
gcataaagcgtttctgtagggnnnnnnnn--gtctataacccacatcgactaattctcaagttaaagccagccttttatagttataaaatgaacaaactg |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36366729 |
gcataaagcgtttctgtagggttttttttttgtctataacccacatcgactaattctcaagttaaagccagccttttatagttataaaatgaacaaactg |
36366630 |
T |
|
| Q |
214 |
cttctcttacaaagcaacaagcccaatgactaatgaggtcatatttcctctgttcaagattcttcatttatattacttcattcacaagatgtta |
307 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
36366629 |
cttctctcacaaagcaacaggcccaatgactaatgaggtcatatttcctctgttctagattcttcatttatattatttctttcacaagatgtta |
36366536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 36385891 - 36385783
Alignment:
| Q |
154 |
ccacatcgactaattctcaagttaaagccagccttttatagttataaaatgaacaaactgcttctcttacaaagcaacaagcccaatgactaatgaggtc |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | ||||||||||||| | ||||||| ||| |||||||||||||||| || ||||||||| |
|
|
| T |
36385891 |
ccacatcgactaattcacaagttaaagccagctttttttggttataaaatgaaaatgatgcttctattataaagcaacaagcccaacgatgaatgaggtc |
36385792 |
T |
|
| Q |
254 |
atatttcct |
262 |
Q |
| |
|
||||||||| |
|
|
| T |
36385791 |
atatttcct |
36385783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University