View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_41 (Length: 333)
Name: NF10923_low_41
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 52039020 - 52039329
Alignment:
| Q |
16 |
aatactccaacctatagttgtactcaacaacacttgatttcttctcatgattgctccctcacattacaacctctattcttgcatgacaactccatcaata |
115 |
Q |
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| T |
52039020 |
aatactccaacctatagttgtattcaacaacacttgatttcttctcatgattgctccctcatattacagcctctattcttgcatgacaactccatccata |
52039119 |
T |
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| Q |
116 |
ttaattccaattatttgtttccctggactcatgcataacggttccatcaaattatttatttgtcatgacttattcataatcgttctttcaatttgtagtc |
215 |
Q |
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| T |
52039120 |
ttaattccaattatttgtttccctggattcatgcataacggttccatcaaattatttatttgtcatgacttattcataatctttctttcaatttgtagtc |
52039219 |
T |
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| Q |
216 |
tcattctaaccatagcagctccctcattcttac--cttgcaaaacatgtacagctacaaaaccatgtactcttgattccaaaagaaaaataatacacata |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52039220 |
tcattctaaccatagcagctccctcattcttacattttgcaaaacatgtacagctacaaaaccatgtactcttgattccaaaagaaaaataatatacata |
52039319 |
T |
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| Q |
314 |
agagcctttg |
323 |
Q |
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|||||||||| |
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| T |
52039320 |
agagcctttg |
52039329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 53552711 - 53552854
Alignment:
| Q |
23 |
caacctatagttgtactcaacaacacttgatttcttctcatgattgctccctcacattacaacctctattcttgcatgacaactccatcaatattaattc |
122 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
53552711 |
caacctatatgtgtactcaacaacactttatttcttctcatgacagct--ctttcattacaacctctattcttgaatgacagctccatcaatattaattc |
53552808 |
T |
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| Q |
123 |
caattatttgtttccctggactcatgcataacggttccatcaaatt |
168 |
Q |
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||||||||| ||||||| ||| |||||||||||||||| ||||||| |
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| T |
53552809 |
caattatttctttcccttgacccatgcataacggttccttcaaatt |
53552854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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