View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_42 (Length: 332)
Name: NF10923_low_42
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_42 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 45270495 - 45270181
Alignment:
| Q |
18 |
gatccaaagctctaccatcatcgtgagaaaaggcaattatgataaaaatgaatacaacgtaattgtcgcagacggatcaccgcaggtgaatatgaatact |
117 |
Q |
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| T |
45270495 |
gatccaaagctctaccatcatcgtgagaaaaggcaattatgatcataatgaatacaacgtaattgtcgcagacggatcaccgctggtgaatatgaatact |
45270396 |
T |
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| Q |
118 |
ggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaagaatgaat |
217 |
Q |
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| T |
45270395 |
ggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagaccatggcaaaatgaat |
45270296 |
T |
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| Q |
218 |
caaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaaccaaacaagccagaaaaacattatga |
317 |
Q |
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| T |
45270295 |
caaaggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagccagaaaaacatcatga |
45270196 |
T |
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| Q |
318 |
aaacacgtgttactt |
332 |
Q |
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| T |
45270195 |
aaacacgtgttactt |
45270181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 104 - 292
Target Start/End: Complemental strand, 45273941 - 45273753
Alignment:
| Q |
104 |
tgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagacc |
203 |
Q |
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| T |
45273941 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45273842 |
T |
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| Q |
204 |
atggaagaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
292 |
Q |
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| T |
45273841 |
atggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac |
45273753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 104 - 292
Target Start/End: Complemental strand, 45282185 - 45281997
Alignment:
| Q |
104 |
tgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagacc |
203 |
Q |
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| T |
45282185 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45282086 |
T |
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| Q |
204 |
atggaagaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
292 |
Q |
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| T |
45282085 |
atggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac |
45281997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 45293519 - 45293337
Alignment:
| Q |
110 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
209 |
Q |
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| T |
45293519 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45293420 |
T |
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| Q |
210 |
gaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
292 |
Q |
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| T |
45293419 |
ggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaac |
45293337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 45302479 - 45302297
Alignment:
| Q |
110 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
209 |
Q |
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| T |
45302479 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45302380 |
T |
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| Q |
210 |
gaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
292 |
Q |
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| T |
45302379 |
ggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaac |
45302297 |
T |
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