View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_44 (Length: 323)
Name: NF10923_low_44
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 50108955 - 50108667
Alignment:
| Q |
18 |
aaactttcttatctaaccaaatcattgttgacagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaat |
117 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108955 |
aaactttcttatataaccaaatcatcgttggcagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaat |
50108856 |
T |
|
| Q |
118 |
attatcttgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108855 |
attatcttgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaa |
50108756 |
T |
|
| Q |
218 |
cttatnnnnnnnnnnctaaataaattaagataaaatagaatcgccaaggccaccctaagttaacattaccctccacccctgatctgatgt |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50108755 |
cttat-caaaaaaaactaaataaattaagataaaatagaatcgccaaggccaccctaagttaacattaccctccacccctgatctcatgt |
50108667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 4430064 - 4430105
Alignment:
| Q |
181 |
tatattatgagagtggctaaacacaataatacactaacttat |
222 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4430064 |
tatattattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
84 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
148 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |
|
|
| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University