View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_45 (Length: 318)
Name: NF10923_low_45
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 16972745 - 16972459
Alignment:
| Q |
17 |
aacaagctgtagtgtattacaacatgggaaaacataatatgtctaaggtccgtgttaatgtcacattgtctgacttgaaggaccagctggaccaaattaa |
116 |
Q |
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| T |
16972745 |
aacaagttgtagtgtattacaacatgggaaaacataatctgtttaaggtccgtgtgaatgtcacactgtctgacttgaaggaccagctggaccaaattaa |
16972646 |
T |
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| Q |
117 |
tggtcgtctcaaccacagaggcnnnnnnngggtggacattgttgagtatcatcgtctgttggtagactcaggtggaagtgtctggttcatccatatgaag |
216 |
Q |
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| T |
16972645 |
tggtcgtctcaaccatagaggcaaaaaaagggtggacattgttgagtatcatcgtctgttggtagactcaggtggaagtgtctggttcatccatatgaag |
16972546 |
T |
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| Q |
217 |
ctctataacaaagacgatgtaagaaccatgttctctgtatttggtcgacatagtttgaagggatcggttgagttagacgcttctctg |
303 |
Q |
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| T |
16972545 |
ctctataacaaagacgatgtgagaaccatgttctctatatttggtcgacatagtttgaagggatcggttgagttagacgcttctctg |
16972459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 279
Target Start/End: Complemental strand, 2426124 - 2426026
Alignment:
| Q |
181 |
gactcaggtggaagtgtctggttcatccatatgaagctctataacaaagacgatgtaagaaccatgttctctgtatttggtcgacatagtttgaaggga |
279 |
Q |
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| T |
2426124 |
gactcagatggaagtgtttggttcacccaaatgaagatctagaacaaccatgatttgagaaccatgttctttatatttgatcaacatagtttgaaggga |
2426026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 25577999 - 25577952
Alignment:
| Q |
85 |
tctgacttgaaggaccagctggaccaaattaatggtcgtctcaaccac |
132 |
Q |
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| T |
25577999 |
tctgacttgaaggatcaactagaccaaattaatgatcgtctcaaccac |
25577952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 35472008 - 35471955
Alignment:
| Q |
209 |
atatgaagctctataacaaagacgatgtaagaaccatgttctctgtatttggtc |
262 |
Q |
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| T |
35472008 |
atatgaagctctggaacaatgacggtgtgagaaccatgttctctatatttggtc |
35471955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 24449902 - 24449975
Alignment:
| Q |
63 |
ggtccgtgttaatgtcacattgtctgacttgaaggaccagctggaccaaattaatggtcgtctcaaccacagag |
136 |
Q |
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| T |
24449902 |
ggtccatgttgatgtcacattgtctaacttgaaggatcagctggaccaaataaagagtcggctcaaccaaagag |
24449975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 35433184 - 35433143
Alignment:
| Q |
91 |
ttgaaggaccagctggaccaaattaatggtcgtctcaaccac |
132 |
Q |
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| T |
35433184 |
ttgaaggatcagctagaccaaattaatgatcgtctcaaccac |
35433143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 35394954 - 35394887
Alignment:
| Q |
69 |
tgttaatgtcacattgtctgacttgaaggaccagctggaccaaattaatggtcgtctcaaccacagag |
136 |
Q |
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| T |
35394954 |
tgttgatgtcacactgtcggacttgaaggaccaactagaccaagttaacggtcgtctcaactacagag |
35394887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 12733504 - 12733420
Alignment:
| Q |
46 |
aaacataatatgtctaaggtccgtgttaatgtcacattgtctgacttgaaggaccagctggaccaaattaatggtcgtctcaacca |
131 |
Q |
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| T |
12733504 |
aaacctaatatgcttaaggtccatgttgatgtcacactgtctg-catgaaggaccagccagaccaaattaacggtcgtctaaacca |
12733420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 42879630 - 42879578
Alignment:
| Q |
81 |
attgtctgacttgaaggaccagctggaccaaattaatggtcgtctcaaccaca |
133 |
Q |
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| T |
42879630 |
attgtctggcttgatggatcagctgaaccaaattaatggctgtctcaaccaca |
42879578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 39156092 - 39156140
Alignment:
| Q |
74 |
atgtcacattgtctgacttgaaggaccagctggaccaaattaatggtcg |
122 |
Q |
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| T |
39156092 |
atgtcacactgtctgacttgaaggaacaactagaccaaataaatggtcg |
39156140 |
T |
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