View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_46 (Length: 312)
Name: NF10923_low_46
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2201042 - 2201347
Alignment:
| Q |
1 |
tgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaactgcaattgagttttggtttccaaa |
100 |
Q |
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| T |
2201042 |
tgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaactgcaattgagttttggtttccaaa |
2201141 |
T |
|
| Q |
101 |
cctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgttaactttcacccaagttcaccaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
2201142 |
cctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgctaactttcacccaagttcactaat |
2201241 |
T |
|
| Q |
201 |
ttatgcgaaaaacttacctgttttattaacaaagttccttatatttgatnnnnnnntatatgcaggctctcaattcacactttattaagaactttgatgt |
300 |
Q |
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| T |
2201242 |
ttatgcgaaaaacttacctgttttattaacaaagttccttatatttgataaaaaaaaaaatgcaggctctcaattcacactttattaagaactttgatgt |
2201341 |
T |
|
| Q |
301 |
ccatct |
306 |
Q |
| |
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| |||| |
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| T |
2201342 |
ctatct |
2201347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2213718 - 2214025
Alignment:
| Q |
1 |
tgttcctttatacgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttaacttaact--gcaattgagttttggtttcca |
98 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||| |||||||||||| |
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| T |
2213718 |
tgttcctttatatgataccttaggtatgtgtaaacgtttagcatgtttgtacacagtgatggtgctttgtccgcaattagcaattgaattttggtttcca |
2213817 |
T |
|
| Q |
99 |
aacctactgtacatgagattttacactttgatgttgttagaaaagttgcaacatttttgtcaatatggcattttttgttaactttcacccaagttcacca |
198 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
2213818 |
aacctgttgtacatgagattttacactttgatgttattagaaaagttgcaacgtttttgtcaatatggcattttttgctgactttcacccaagctcacca |
2213917 |
T |
|
| Q |
199 |
atttatgcgaaaaacttacctgttttattaacaaagttccttata-tttgatnnnnnnntatatgcaggctctcaattcacactttattaagaactttga |
297 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| | ||| ||||||||| |||||||||||||||| |
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| T |
2213918 |
atttatgcgaaaaacttacctgtactattaacaaagttccttatattttgataaaaaaa-atatgcaagttctaaattcacacattattaagaactttga |
2214016 |
T |
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| Q |
298 |
tgtccatct |
306 |
Q |
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|||| |||| |
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| T |
2214017 |
tgtctatct |
2214025 |
T |
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