View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_low_47 (Length: 311)

Name: NF10923_low_47
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_low_47
NF10923_low_47
[»] chr5 (11 HSPs)
chr5 (7-308)||(39463614-39463915)
chr5 (7-277)||(39451815-39452085)
chr5 (7-308)||(39457352-39457653)
chr5 (7-290)||(39476327-39476610)
chr5 (7-277)||(39487280-39487550)
chr5 (7-277)||(39484078-39484348)
chr5 (7-277)||(39455442-39455713)
chr5 (7-194)||(39469931-39470118)
chr5 (24-277)||(39472862-39473115)
chr5 (54-308)||(39461112-39461369)
chr5 (6-298)||(43311597-43311889)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 39463915 - 39463614
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39463915 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 39463816  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39463815 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctccacaggcccaaatacta 39463716  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggagttccacttgccacttggccgatctctg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  39463715 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggtgttccacttgccacttggccgatctttg 39463616  T
Q  307 ct 308  Q
    ||    
T  39463615 ct 39463614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 39451815 - 39452085
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||||||||| |||| ||||||||||||||||||||| | ||| || |||||||| ||||||||  |||||||||||||||||  ||| || ||||||||    
T  39451815 ttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatggctgcaccttctgatta 39451914  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    | ||||||||||| |  |||| |||||||| |||||||||||| |||| || | |||||||||||||||||||||||||||  |||| ||||||||||||    
T  39451915 cactctttctgatctgtgttcggttttaccagaaggattcttagatcgaacggaagagattggaagggtgattggttgggccccacaagcccaaatacta 39452014  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg 277  Q
    || || || ||||  ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  39452015 gcacatccagccataggaggatttgtttcacattgtggctggaattccacactcgagagcatatattttgg 39452085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 39457653 - 39457352
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||||||||| || |||||| | ||||||| |||||  || ||||| ||||||||||||||||| ||||| |||| | |||||| |||||||||||||||    
T  39457653 ttaaggagatcgcccttgctgtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccatctgatta 39457554  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    | |||||||||||||  |||| |||||||| |||||||||||| || |||| | ||||||||||||||| ||||| |||||  ||||| | || ||||||    
T  39457553 cactctttctgatttgagttcggttttaccagaaggattcttagataggacagcagagattggaagggttattggatgggccccacagacgcacatacta 39457454  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggagttccacttgccacttggccgatctctg 306  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||| |||||||||||| || ||  ||||||| |||||| ||| ||    
T  39457453 gcccacccagccacgggaggatttgtttctcattgtggctggaattccacactcgagaacatatattttggtgtgcctgttgccacgtggccgctctttg 39457354  T
Q  307 ct 308  Q
    ||    
T  39457353 ct 39457352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 39476327 - 39476610
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||||||||| |||| |||| |||||||||||||||| ||||| || |||||||| |||||||| ||| |||||||| | |||  ||| || || |||||    
T  39476327 ttaaggagatcgcacatgctgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctccagcaaagggcactatggctgcaccctcggatta 39476426  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    |||||||| |||||| |||   |||||||| |||||||||||| || | ||||  |||||||||||| |  |||| |||||   ||||||||||||||||    
T  39476427 ccctctttatgatttgggtctggttttacctgaaggattcttagatagaactgctgagattggaaggatagttggatgggcccaacaggcccaaatacta 39476526  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggagttccacttgcc 290  Q
    |||||||| ||||  ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||| |||||    
T  39476527 gcccacccagccataggaggatttgtttcacattgtggttggaattcaacactcgagagcatatattttggtgtaccaattgcc 39476610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 39487280 - 39487550
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||| |||||||||| ||||||||||||| |||| || || ||||| |||||||| ||||||||| |||| |||||   |||| || | || ||||||||    
T  39487280 ttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgatta 39487379  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    ||||||||||||||| |  || |||||||| |||||||||||| |||| ||   || |||||||||||| ||||| |||||   ||||||||||||||||    
T  39487380 ccctctttctgatttggaatcggttttacctgaaggattcttagatcgaacaacagggattggaagggtaattggatgggcccaacaggcccaaatacta 39487479  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg 277  Q
    || || || ||||| ||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||    
T  39487480 gctcatccagccactggaggatttgtttcgcattgtggttggaattcaacactcgagagcatatattttgg 39487550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 39484078 - 39484348
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||||||||| |||| || | |||||||||||||||| ||||| || |||||||| |||||||| | |  ||||||| |||||  ||| || ||||||||    
T  39484078 ttaaggagatcgcacatgttgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctctagtaaagggcaccatggctgcaccctctgatta 39484177  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatacta 206  Q
    | |||||| |||||| ||| | |||||||| |||||||||||| |||| ||||  |||||||||||| | ||| | |||||   ||| ||||||||||||    
T  39484178 ctctctttatgatttgggtccggttttacctgaaggattcttagatcgaactgccgagattggaaggataattagatgggcccaacaagcccaaatacta 39484277  T
Q  207 gcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg 277  Q
    |||||||| ||||  ||||||||||| ||||||| ||| |||||||| ||||| |||||||||||||||||    
T  39484278 gcccacccagccataggaggatttgtttcacattatggttggaattcaacactcgagagcatatattttgg 39484348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 39455442 - 39455713
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaaggg-cgccatgattgcgccatctgatt 105  Q
    |||||||||| |||  ||||||||||||||||  | | | |||  | |||||||| ||||||||   ||| ||||| ||||| |  ||| || |||||||    
T  39455442 ttaaggagatcgcatgtgctattgagaatagtaagtcccacttcatatggtctctccgtaaacctgtaccgaaggggcgccagggctgcaccttctgatt 39455541  T
Q  106 accctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatact 205  Q
    || |||||||||||||  ||||  |||||||||||||||||||| |||| || | |||||||||||||||||||||||||||| ||||  ||||||||||    
T  39455542 acactctttctgatttgtgttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattggttgggctccacaaacccaaatact 39455641  T
Q  206 agcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg 277  Q
    |||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||| ||||||| |||||    
T  39455642 agcccatccagccacaggaggatttgtttcacattgtggttggaattccacactcgagggcatatactttgg 39455713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 39470118 - 39469931
Alignment:
Q  7 ttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatta 106  Q
    |||||| ||| ||||||||| | ||||||| |||||  ||  |||| ||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||    
T  39470118 ttaaggggatcgcacttgctgtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaagggcaccatggttgcgccatctgatta 39470019  T
Q  107 ccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacag 194  Q
    |||||||||||||||  |||| |||||||| |||||||||||| || |||| | ||||||||||||||| ||||| |||||| |||||    
T  39470018 ccctctttctgatttgagttcggttttaccagaaggattcttagataggacagaagagattggaagggttattggatgggctccacag 39469931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 39472862 - 39473115
Alignment:
Q  24 gctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgatttag 123  Q
    |||||||||||||||||||| || ||  | |||||||| |||||||| |||||  ||||| |||||    |||| |||||||||||||||| |||||| |    
T  39472862 gctattgagaatagtggggcccggttcatatggtctcttcgtaaacctccaccggagggcaccatggcctcgccctctgattaccctctttttgatttgg 39472961  T
Q  124 gttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctacacaggcccaaatactagcccacccggccacggg 223  Q
    ||||   ||||||||||||||| ||| | ||||| | |||||||||||||||  |||| |||||  |||| | |||||||||||||||||| ||||  ||    
T  39472962 gttcaagtttacccgaaggatttttagagcggacagcagagattggaagggttgttggatgggccccacaagtccaaatactagcccacccagccattgg 39473061  T
Q  224 aggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg 277  Q
    ||||||||  || |||||||| ||||||||   ||| |||||||| ||||||||    
T  39473062 aggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg 39473115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 308
Target Start/End: Original strand, 39461112 - 39461369
Alignment:
Q  54 tggtctctacgtaaacccccaccaaaggg---cgccatgattgcgccatctgattaccctctttctgatttaggttccgttttacccgaaggattcttat 150  Q
    |||||||| |||||||||  ||| |||||   ||||||| |||| || ||||||||| ||||| |||| || || |  |||||||||||||| ||||||     
T  39461112 tggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaattgggcttggttttacccgaagggttcttag 39461211  T
Q  151 atcggactgtagagattggaagggtgattggttgggctacacaggcccaaatactagcccacccggccacgggaggatttgtctcacattgtggctggaa 250  Q
    ||||||| | || |||||||||||| ||||| |||||| | ||| | |||||| | |||||||| |||||||||||||| || || ||||||||||||||    
T  39461212 atcggacagcagggattggaagggtcattggatgggctccgcagactcaaatattggcccacccagccacgggaggattcgtttcccattgtggctggaa 39461311  T
Q  251 ttcgacactggagagcatatattttggagttccacttgccacttggccgatctctgct 308  Q
    ||| | ||| |||||||| |||||||| || ||  ||||||| |||||| ||| ||||    
T  39461312 ttcaatactcgagagcatgtattttggtgtgcccattgccacgtggccgctctttgct 39461369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 43311889 - 43311597
Alignment:
Q  6 attaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgatt 105  Q
    |||| |||||||||   |||||||||||| |||| |||||||||  | |||||||| || ||||||||||| |||||  |||||  || | |||||||||    
T  43311889 attagggagattgcgtatgctattgagaaaagtgaggctcgcttcctgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgatt 43311790  T
Q  106 accctctttctgatttaggttccgttttacccgaaggattcttatatcggactg-tagagattggaagggtgattggttgggctacacaggcccaaatac 204  Q
    || ||||||||||||| |   | |||||||| ||||| |||||| |||| || | ||| || ||||||||| ||||| |||||| | |||| |||| |||    
T  43311789 actctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctag-gactggaagggtcattggatgggctcctcaggtccaagtac 43311691  T
Q  205 tagcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggagttccacttgccacttggcc 298  Q
    | || || || || || ||||| ||||| ||||||||||| ||||||||||| || ||||||||||||| ||| || ||  ||||||| |||||    
T  43311690 tcgctcatccagcaacaggaggctttgtttcacattgtggttggaattcgactctcgagagcatatattatggtgtgcctattgccacatggcc 43311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University