View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_48 (Length: 307)
Name: NF10923_low_48
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 45270285 - 45269985
Alignment:
| Q |
1 |
catcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaaccaaacaagccagaaaaacattatgaaaacacgtgt |
100 |
Q |
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| T |
45270285 |
catcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagccagaaaaacatcatgaaaacacgtgt |
45270186 |
T |
|
| Q |
101 |
tactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270185 |
tactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctacca |
45270086 |
T |
|
| Q |
201 |
aatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactacctttgctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45270085 |
aatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactaccttggctt |
45269986 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
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| |
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|
| T |
45269985 |
c |
45269985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 45273744 - 45273547
Alignment:
| Q |
92 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
191 |
Q |
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||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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| T |
45273744 |
aacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg |
45273645 |
T |
|
| Q |
192 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
291 |
Q |
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|||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45273644 |
aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
45273557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 45281988 - 45281791
Alignment:
| Q |
92 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
191 |
Q |
| |
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||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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| T |
45281988 |
aacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg |
45281889 |
T |
|
| Q |
192 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
291 |
Q |
| |
|
|||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45281888 |
aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
45281801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 45293339 - 45293186
Alignment:
| Q |
81 |
aacattatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcat |
180 |
Q |
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|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| ||| |
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| T |
45293339 |
aacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccat |
45293240 |
T |
|
| Q |
181 |
tagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggacc |
234 |
Q |
| |
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||||||| |||||||||||||| ||| || || |||||||| | |||||||| |
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| T |
45293239 |
tagcagggccgaggctaccaaattcactgctggtttatggctccaagctggacc |
45293186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 45302299 - 45302146
Alignment:
| Q |
81 |
aacattatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcat |
180 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |||| ||| |
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| T |
45302299 |
aacattttgaaaacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccat |
45302200 |
T |
|
| Q |
181 |
tagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggacc |
234 |
Q |
| |
|
||||||| |||||||||||||| ||| || || |||||||| | |||||||| |
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| T |
45302199 |
tagcagggccgaggctaccaaattcactgctggtttatggctccaagctggacc |
45302146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 45273815 - 45273753
Alignment:
| Q |
3 |
tcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
65 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| || ||||| |
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|
| T |
45273815 |
tcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac |
45273753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 45282059 - 45281997
Alignment:
| Q |
3 |
tcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggccagaagaac |
65 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||| || ||||| |
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|
| T |
45282059 |
tcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaac |
45281997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 45293399 - 45293346
Alignment:
| Q |
3 |
tcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggc |
56 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||| |
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|
| T |
45293399 |
tcatggaatccaccattggtgattttattcatccagatggatggaccccttggc |
45293346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 45302359 - 45302306
Alignment:
| Q |
3 |
tcatggaatccacaattggtgatttgattcatcaagatggatggaccacttggc |
56 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||| |
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|
| T |
45302359 |
tcatggaatccaccattggtgattttattcatccagatggatggaccccttggc |
45302306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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