View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_5 (Length: 749)
Name: NF10923_low_5
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 67 - 735
Target Start/End: Complemental strand, 39075251 - 39074578
Alignment:
| Q |
67 |
aaatgtaatcagattagtcccaaaacaaaccatactacaaacagaactgtgtgaccaaaacaagaagtttcttgaaaacaaatatggacctgcgtgtttg |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075251 |
aaatgtaatcagattagtcccaaaacaaaccatactacaaacagaactgtgtgaccaaaacaagaagtttcttgaaaacaaatatggacctgcgtgtttg |
39075152 |
T |
|
| Q |
167 |
aagtaactcaaacgtacgtcagctacaagacttacgtaaaaaaacaacaaaactgatacattccgtnnnnnnnnngtctcacatgtcacgtaaaacttag |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39075151 |
aagtaactcaaacgtacgtcagctacaagacttacgtaaaaaaacaacaaaactgatacattccgtaaaaaaaaagtctcacatgtcacgtaaaacttag |
39075052 |
T |
|
| Q |
267 |
tagtcaaaactcaaccataaagaaagaaacaaaagccaattttgaaccaaaccaaaccatatgttgtggttcggtctattgatgtcactcaaacatttgt |
366 |
Q |
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| T |
39075051 |
tagtcaaaactcaaccataaagaaagaaacaaaagccaattttgaaccaaaccaaaccatatgttgtggttcggtctattgatgtcactcaaacatttgt |
39074952 |
T |
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| Q |
367 |
ttgatatggcacataggatattcaattattttcttgcttgattttgcaaaccttggagtatctccaacgaaggttccgaacgttgatgaacatttatctt |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074951 |
ttgatatggcacataggatattcaattattttcttgcttgattttgcaaaccttggagtatctccaacgaaggttccgaacgttgatgaacatttatctt |
39074852 |
T |
|
| Q |
467 |
aatttttcagttcatcggaggaactatgatatggcaaaatgggtagtatagaaattgttgaaacatcttaaattagat-----ccactatcataaaatat |
561 |
Q |
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| T |
39074851 |
aatttttcagttcatcggaggaactatgatatggtaaaatgggtagtatagaaattgttgaaacatcttaaattagatgcacagcactatcataaaatat |
39074752 |
T |
|
| Q |
562 |
cattgaatgcaaataaaaaagatatacaagagttgtataattttcattattggagcaaaattgatattagttgcatatgtatgatctggctggcattgag |
661 |
Q |
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| T |
39074751 |
cattgaatgcaaataaaaaagatatataagagttgtataattttcattattggagcaaaattgatattagttgcatatgtatgatctggctggcattgag |
39074652 |
T |
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| Q |
662 |
ggaccatattttagtagagtatgaaattcaaattatgtaccttaaaaaatgatgatcttacatctatgtttttg |
735 |
Q |
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| T |
39074651 |
ggaccattttttagtagagtatgaaactcaaattatgtaccttaaaaaatgatgatcttacatctatgtttttg |
39074578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 39075290 - 39075248
Alignment:
| Q |
3 |
atggttcacactataaaatagtcagccatatgaagggacaaat |
45 |
Q |
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| T |
39075290 |
atggttcacactataaaatagtcagccatatgaagggacaaat |
39075248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 569
Target Start/End: Complemental strand, 43139934 - 43139811
Alignment:
| Q |
446 |
acgttgatgaacatttatcttaatttttcagttcatcggaggaactatgatatggcaaaatgggtagtatagaaattgttgaaacatcttaaattagatc |
545 |
Q |
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||||||||| | || ||||||||||||||| | || |||||||| ||||| | |||||||| ||||||||| ||||||||| ||||||||| |||| |
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| T |
43139934 |
acgttgatggatatgtatcttaatttttcaatcaattggaggaaccatgatgtaccaaaatggatagtatagagattgttgaattatcttaaataagata |
43139835 |
T |
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| Q |
546 |
cactatcataaaatatcattgaat |
569 |
Q |
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| T |
43139834 |
cgttatcataaaataacattgaat |
43139811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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