View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_50 (Length: 306)
Name: NF10923_low_50
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 40847635 - 40847912
Alignment:
| Q |
19 |
tgtttataaaatttatcataatttaggctcaaggggtgttttaacgaagtcctcgtcactcaagttaatgatac-aacacatgtaccccaaaataatctt |
117 |
Q |
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| T |
40847635 |
tgtttataaaatttatcataattttggctcaaggggtgttttaacgaagtcctcgtcactcaagttaatgataccaacacatgtaccccaaaataatctt |
40847734 |
T |
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| Q |
118 |
cgaagccccacgaatgacacattccatgaaagtaaactgcataaccggtgtcttgccacccttgacgtcgtacatgatttggcatttagaatatataccc |
217 |
Q |
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| T |
40847735 |
cgaagccccacgaatgacacattccatgaaagtaaactgcataaccggtgtcttgccacccttgacgtcgtacatgatttggcatttagaatatataccc |
40847834 |
T |
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| Q |
218 |
tatccttgatatttagggaaatcgtaaaatagtccaacattttaaaagtggaacacgtgccatgtttcacccattcat |
295 |
Q |
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| T |
40847835 |
tatcgttgatatttagggaaatcgtaaaatagtccaacattttaaaagtggaacacgtgccatgtttcacccattcat |
40847912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 40843342 - 40843470
Alignment:
| Q |
52 |
gggtgttttaacgaagtcctcgtcactcaagttaa-tgatac-aacacatgtaccccaaaataatcttcgaagccccacgaatgacacattccatgaaag |
149 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||| |||| ||| ||||||||||||||||| |||||||| |||||||||| ||||||| | |
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| T |
40843342 |
gggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcccatgaagg |
40843441 |
T |
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| Q |
150 |
taaactgcataaccggtgtcttgccaccc |
178 |
Q |
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| T |
40843442 |
tgtactgcataaccggtgtcttgccaccc |
40843470 |
T |
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