View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_54 (Length: 289)
Name: NF10923_low_54
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 273
Target Start/End: Original strand, 20630748 - 20631018
Alignment:
| Q |
3 |
agggagcctaaaaggctaaatcatcgattttttgatcacatagacacgccaaaagtagcactttgcaataacgaatgcaagtaatatattttcaagaata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20630748 |
agggagcctaaaaggctaaatcatcgattttttgatcacatagacacgccaaaagtagcactttgcaataacgaatgcaagtaatatattttcaagaata |
20630847 |
T |
|
| Q |
103 |
taaaattcaaaaggcctatatcaaattcatcattaacatcataaatcaatttccccattgaagaatcctagctgcacaaacttcaacattacaaaatact |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
20630848 |
taaaattcaaaaggcctatatcaaattcatcattaccatcataaatcaatttccccattgaagaatccttgctacacaaacttcaacattataaaatact |
20630947 |
T |
|
| Q |
203 |
tgttcatatctagttattaaggaagcttcaagccctaattaagtcattagctaagcagtgagtgaacaaat |
273 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20630948 |
tgttaatatctacttattaaggaagcttcaagccctaattaagtcattagctaagcagtgagtgaacaaat |
20631018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 20646851 - 20647117
Alignment:
| Q |
7 |
agcctaaaaggctaaatcatcgattttttgatcacatagacacgccaaaagtagcactttgcaataac-gaatgcaagtaatatattttcaagaatataa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
20646851 |
agcctaaaaggctaaatcatcgattttttgatcacatggacacaataaaagtagcactttgcaataactgagtgcaagtaatatattttcaagaatataa |
20646950 |
T |
|
| Q |
106 |
aattcaaaaggcctatatcaaattcatcattaacatcataaatcaatttccccattgaagaatcctagctgcacaaacttcaacattacaaaatacttgt |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20646951 |
a-ttcaaaaggcctatatcaaattcatcattaacatcataaatcaatttccccattgaagaatcctagctgcacaaacttcaacattacaaaatacttgt |
20647049 |
T |
|
| Q |
206 |
tcatatctagttattaaggaagcttcaagccctaattaagtcattagctaagcagtgagtgaacaaat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20647050 |
tcatatctagttattaaggaagcttcaagccctaattaagtcattagctaagcagtgagtggacaaat |
20647117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University