View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_55 (Length: 280)
Name: NF10923_low_55
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_55 |
 | |
|
| [»] scaffold0062 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0062 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 5387 - 5655
Alignment:
| Q |
12 |
tgaaacgattgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaaaaactccattcaatcctgctgaggataatatatg |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5387 |
tgaaacggttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaaaaactccattcaatcctgctgaggataatatatg |
5486 |
T |
|
| Q |
112 |
gacggagaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaagtggcagaagtataattgatggtattgacatcaattatgagcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5487 |
gacggagaaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaagtataattgatggtattgacatcaattatgagcac |
5586 |
T |
|
| Q |
212 |
atcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagatctc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5587 |
atcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagatctc |
5655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 15723 - 15873
Alignment:
| Q |
20 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
116 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||| | ||| |||| |
|
|
| T |
15723 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
15822 |
T |
|
| Q |
117 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
167 |
Q |
| |
|
| |||||| ||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
15823 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
15873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 25891 - 26041
Alignment:
| Q |
20 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
116 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||| | ||| |||| |
|
|
| T |
25891 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
25990 |
T |
|
| Q |
117 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
167 |
Q |
| |
|
| |||||| ||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
25991 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
26041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 36057 - 36207
Alignment:
| Q |
20 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
116 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||| | ||| |||| |
|
|
| T |
36057 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
36156 |
T |
|
| Q |
117 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
167 |
Q |
| |
|
| |||||| ||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
36157 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
36207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University