View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_57 (Length: 268)
Name: NF10923_low_57
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_57 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 5701501 - 5701757
Alignment:
| Q |
12 |
aagaataaaaatactaaccggatcaattgtaccattagggaacaacgaataaaatagaagtccgtctcccttcagtggcttgatttttaaaccaatgcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5701501 |
aagaataaaaatactaaccggatcaattgtaccattagggaacaacgaataaaatagaagtccgtctcccttcagtggcttgatttttaaaccaatgcaa |
5701600 |
T |
|
| Q |
112 |
tcctcaaaattatagctactgtccatgttcgacccattctacacaataataatgcacgaattagtaaagtgcgtagctagaaaatgagaaatattatgcg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5701601 |
tcctcaaaattatagctactgtccatgttcgacccattctacacaataataatgcacgaattagtaaagtgcgtagctagaaaatgagaaatattatgtg |
5701700 |
T |
|
| Q |
212 |
agtcgagatgcagagacaaagtagattttaccacaaacggaaacatggtctccccac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5701701 |
agtcgagatgcagagacaaagtagattttacctcaaacggaaacatggtctccccac |
5701757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University