View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_59 (Length: 260)
Name: NF10923_low_59
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 21132406 - 21132620
Alignment:
| Q |
20 |
tatggaccatacaatgattagtggtggaatatagagtgaacactacctcatccaccatgtcaataacatatgtattgtctatctataggtgttgaagatt |
119 |
Q |
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| T |
21132406 |
tatggaccatacaatgattagtggtggaatatagagtgaacactacctcatccaccatgtcaataacatatgtattgtctatctataggtgttgaagatt |
21132505 |
T |
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| Q |
120 |
tctactccaaaga--ctaaaataatctagaatactctaaaatttgcatcaattatcatttctctatgcaagacggcatataaatattgtataatttgcat |
217 |
Q |
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| T |
21132506 |
tctactccaaagactctaaaataatctagaatactctaaaatttgcatcaattatcatttctctatgcaagacggcatataaatattgtataatttgcat |
21132605 |
T |
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| Q |
218 |
gaattttaacattac |
232 |
Q |
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||||||||||||||| |
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| T |
21132606 |
gaattttaacattac |
21132620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 18661702 - 18661741
Alignment:
| Q |
209 |
aatttgcatgaattttaacattacgtaccattcacaggtt |
248 |
Q |
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| T |
18661702 |
aatttgcatgaattttaacattacgtaccgtttacaggtt |
18661741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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