View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_low_68 (Length: 238)

Name: NF10923_low_68
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_low_68
NF10923_low_68
[»] chr6 (25 HSPs)
chr6 (5-224)||(24475108-24475327)
chr6 (1-224)||(9516833-9517057)
chr6 (21-194)||(23844322-23844496)
chr6 (7-215)||(27737526-27737734)
chr6 (44-216)||(5624732-5624904)
chr6 (4-174)||(23231862-23232031)
chr6 (94-167)||(22813605-22813678)
chr6 (44-224)||(27124325-27124500)
chr6 (100-223)||(1635110-1635232)
chr6 (94-224)||(14079285-14079416)
chr6 (99-174)||(24657346-24657421)
chr6 (94-196)||(12183187-12183287)
chr6 (88-174)||(21841577-21841663)
chr6 (88-174)||(25781913-25781999)
chr6 (77-174)||(20005795-20005893)
chr6 (99-173)||(22412940-22413014)
chr6 (1-224)||(17826924-17827143)
chr6 (99-159)||(17382215-17382275)
chr6 (104-173)||(19244726-19244794)
chr6 (88-174)||(11136031-11136119)
chr6 (91-169)||(4339874-4339951)
chr6 (82-195)||(20144978-20145092)
chr6 (82-195)||(22187747-22187861)
chr6 (111-195)||(14637026-14637110)
chr6 (131-224)||(17883670-17883762)
[»] chr5 (17 HSPs)
chr5 (1-224)||(24245372-24245595)
chr5 (44-192)||(20744529-20744676)
chr5 (103-215)||(17432033-17432145)
chr5 (1-174)||(20315307-20315481)
chr5 (94-174)||(28664903-28664983)
chr5 (94-174)||(36175275-36175354)
chr5 (94-186)||(20563957-20564050)
chr5 (105-174)||(34128788-34128857)
chr5 (90-174)||(20858810-20858894)
chr5 (94-174)||(24140577-24140657)
chr5 (44-133)||(19004146-19004234)
chr5 (94-174)||(16523680-16523761)
chr5 (118-175)||(39434620-39434677)
chr5 (99-174)||(26835796-26835870)
chr5 (94-215)||(15375732-15375853)
chr5 (90-174)||(17314990-17315074)
chr5 (102-174)||(24852050-24852121)
[»] chr8 (15 HSPs)
chr8 (21-224)||(24114111-24114313)
chr8 (49-224)||(24110497-24110670)
chr8 (106-224)||(26394527-26394644)
chr8 (1-224)||(24269645-24269868)
chr8 (1-169)||(29382243-29382412)
chr8 (94-174)||(23893091-23893171)
chr8 (44-209)||(18448384-18448550)
chr8 (1-224)||(13314821-13315043)
chr8 (88-224)||(17101733-17101869)
chr8 (94-174)||(16404042-16404122)
chr8 (99-174)||(18569201-18569276)
chr8 (77-193)||(25226259-25226376)
chr8 (1-77)||(27659493-27659569)
chr8 (1-72)||(13697903-13697971)
chr8 (94-159)||(14528291-14528355)
[»] chr2 (20 HSPs)
chr2 (44-216)||(17675464-17675637)
chr2 (44-224)||(27908946-27909127)
chr2 (44-216)||(17635610-17635783)
chr2 (46-195)||(28925614-28925764)
chr2 (94-221)||(25618697-25618823)
chr2 (94-214)||(26603198-26603317)
chr2 (88-216)||(30411802-30411930)
chr2 (1-195)||(17743333-17743527)
chr2 (94-174)||(29143091-29143171)
chr2 (77-224)||(29719060-29719206)
chr2 (89-208)||(17349484-17349604)
chr2 (99-171)||(25196157-25196229)
chr2 (94-174)||(25530577-25530657)
chr2 (77-209)||(15339363-15339495)
chr2 (44-159)||(31804791-31804908)
chr2 (94-168)||(32085605-32085678)
chr2 (94-224)||(25887731-25887861)
chr2 (94-174)||(23933423-23933502)
chr2 (94-174)||(25535403-25535483)
chr2 (94-174)||(45553271-45553349)
[»] chr1 (34 HSPs)
chr1 (4-174)||(12208652-12208823)
chr1 (44-216)||(16179098-16179267)
chr1 (1-208)||(9401553-9401761)
chr1 (1-166)||(25405516-25405681)
chr1 (1-168)||(17610139-17610307)
chr1 (94-207)||(21449218-21449332)
chr1 (1-174)||(21666486-21666659)
chr1 (21-216)||(15543802-15543997)
chr1 (99-173)||(16069440-16069514)
chr1 (44-195)||(21334574-21334727)
chr1 (88-174)||(29242642-29242728)
chr1 (4-151)||(14779616-14779764)
chr1 (94-174)||(15807898-15807977)
chr1 (77-224)||(17359286-17359433)
chr1 (94-174)||(18825785-18825865)
chr1 (107-174)||(22623045-22623112)
chr1 (94-164)||(18529079-18529149)
chr1 (77-215)||(18100851-18100985)
chr1 (88-174)||(727591-727677)
chr1 (94-174)||(16916823-16916904)
chr1 (129-174)||(17121378-17121423)
chr1 (128-224)||(13345165-13345261)
chr1 (99-174)||(18736129-18736205)
chr1 (88-224)||(21987819-21987958)
chr1 (94-174)||(22664349-22664428)
chr1 (129-224)||(28008281-28008375)
chr1 (77-215)||(31235885-31236023)
chr1 (99-168)||(22620409-22620478)
chr1 (132-174)||(24214717-24214759)
chr1 (107-168)||(25403974-25404036)
chr1 (94-146)||(16360013-16360064)
chr1 (94-174)||(23179926-23180006)
chr1 (94-174)||(24054108-24054188)
chr1 (94-174)||(32382886-32382965)
[»] chr3 (24 HSPs)
chr3 (4-224)||(17438258-17438479)
chr3 (55-174)||(4650328-4650447)
chr3 (44-173)||(932833-932963)
chr3 (88-174)||(8770143-8770229)
chr3 (94-215)||(2167455-2167574)
chr3 (105-216)||(12411301-12411411)
chr3 (88-174)||(8765241-8765327)
chr3 (94-224)||(21303183-21303311)
chr3 (101-215)||(41508516-41508628)
chr3 (94-174)||(12754800-12754881)
chr3 (94-174)||(20023430-20023510)
chr3 (99-174)||(21302065-21302141)
chr3 (99-169)||(19925504-19925575)
chr3 (94-175)||(16229830-16229912)
chr3 (107-224)||(19908461-19908579)
chr3 (90-170)||(27413778-27413859)
chr3 (99-174)||(8170017-8170093)
chr3 (99-168)||(18736556-18736624)
chr3 (94-174)||(12805768-12805847)
chr3 (94-170)||(21325483-21325558)
chr3 (131-224)||(7478182-7478275)
chr3 (94-174)||(8883000-8883081)
chr3 (77-146)||(20429836-20429904)
chr3 (131-195)||(7494971-7495035)
[»] chr7 (31 HSPs)
chr7 (22-224)||(1848056-1848257)
chr7 (44-224)||(39273003-39273183)
chr7 (44-174)||(20582347-20582477)
chr7 (4-224)||(8978833-8979054)
chr7 (44-195)||(18368836-18368988)
chr7 (1-224)||(2563865-2564089)
chr7 (44-188)||(8053926-8054069)
chr7 (90-224)||(5108702-5108836)
chr7 (88-174)||(13418657-13418743)
chr7 (94-216)||(6042592-6042712)
chr7 (94-173)||(7397283-7397362)
chr7 (44-174)||(8877512-8877643)
chr7 (99-174)||(17829716-17829790)
chr7 (77-166)||(3329542-3329631)
chr7 (88-174)||(13277627-13277713)
chr7 (99-215)||(4785987-4786103)
chr7 (105-174)||(11803221-11803290)
chr7 (131-215)||(16365884-16365968)
chr7 (94-174)||(18662582-18662661)
chr7 (89-224)||(17077252-17077382)
chr7 (99-172)||(6006085-6006157)
chr7 (94-174)||(16058910-16058991)
chr7 (1-77)||(8054464-8054540)
chr7 (99-174)||(17153031-17153106)
chr7 (99-174)||(140263-140337)
chr7 (99-174)||(3734743-3734817)
chr7 (179-222)||(13759725-13759768)
chr7 (94-172)||(31493068-31493145)
chr7 (94-174)||(9131052-9131132)
chr7 (4-104)||(13759808-13759908)
chr7 (131-216)||(4819018-4819105)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-169)||(69961-70129)
[»] chr4 (20 HSPs)
chr4 (4-224)||(17216868-17217093)
chr4 (1-224)||(19492539-19492751)
chr4 (1-224)||(13908902-13909126)
chr4 (1-134)||(16730318-16730450)
chr4 (1-216)||(15164815-15165030)
chr4 (44-224)||(17709845-17710025)
chr4 (99-224)||(24639289-24639414)
chr4 (44-212)||(7582388-7582557)
chr4 (88-216)||(13692516-13692645)
chr4 (94-174)||(25097962-25098043)
chr4 (94-209)||(19562017-19562133)
chr4 (94-174)||(25094695-25094776)
chr4 (101-174)||(25121104-25121176)
chr4 (99-174)||(17026221-17026297)
chr4 (94-216)||(17336970-17337093)
chr4 (94-165)||(17672144-17672214)
chr4 (182-224)||(19636435-19636477)
chr4 (91-168)||(40227914-40227992)
chr4 (75-139)||(12578179-12578240)
chr4 (94-174)||(26115783-26115862)
[»] scaffold0638 (1 HSPs)
scaffold0638 (21-192)||(681-854)
[»] scaffold0671 (1 HSPs)
scaffold0671 (94-174)||(572-652)
[»] scaffold1869 (1 HSPs)
scaffold1869 (55-174)||(266-386)
[»] scaffold0056 (2 HSPs)
scaffold0056 (94-174)||(21406-21486)
scaffold0056 (94-174)||(25116-25196)
[»] scaffold0263 (1 HSPs)
scaffold0263 (47-174)||(15740-15868)
[»] scaffold0054 (1 HSPs)
scaffold0054 (82-195)||(72139-72253)
[»] scaffold0024 (1 HSPs)
scaffold0024 (94-195)||(39727-39827)
[»] scaffold0155 (1 HSPs)
scaffold0155 (94-224)||(35822-35951)
[»] scaffold0386 (1 HSPs)
scaffold0386 (94-174)||(5982-6063)
[»] scaffold0102 (1 HSPs)
scaffold0102 (65-174)||(35652-35759)
[»] scaffold0034 (1 HSPs)
scaffold0034 (99-174)||(76550-76626)
[»] scaffold0001 (1 HSPs)
scaffold0001 (94-173)||(69221-69301)
[»] scaffold0043 (1 HSPs)
scaffold0043 (101-168)||(89737-89803)
[»] scaffold0093 (1 HSPs)
scaffold0093 (99-174)||(43211-43287)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 24475108 - 24475327
Alignment:
Q  5 atccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatc 104  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24475108 atccacaagaattgttatttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttgcaatctttatc 24475207  T
Q  105 tgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagta 204  Q
    ||||||||||||| |||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||||||| ||||||||    
T  24475208 tgtttgcaacaaaacaagtttacctgttttggttgcagaaaagtaagtagtggttaggattcttcgaatctcccctgtttatattgttggatgttaagta 24475307  T
Q  205 acagtaatgtcgtgtttatt 224  Q
    ||| |||||| |||||||||    
T  24475308 acactaatgtggtgtttatt 24475327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9516833 - 9517057
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagat-aaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| | |||||||||||||||| ||||  |||||||||||||||||||||||| ||||||| |||||||||||||||||  ||  |    
T  9516833 tcgtatccacatggattgtcgtttcgtccaaacaactcgcgttacttatttttgtaagttgacgatataaaagataaaagggttagaaaggttgtaagtt 9516932  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtt 199  Q
    ||||||||| |||||| |||||||||| || ||||| ||| |||||| |||| |||  |||||||| |  |||||  | || ||||||||||||||  ||    
T  9516933 ttatctgttagcaacatagcaagtttacctattttgattgcagaaaattaagcagccattaggattataagaatctcccctctttatattgttggatatt 9517032  T
Q  200 aagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||||||||||| |||||||    
T  9517033 aagtaacagtaatgtcgcgtttatt 9517057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 23844496 - 23844322
Alignment:
Q  21 gtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaa-gggttagaaaggttacaatctttatctgtttgcaacaaagc 119  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||||||||||||||| | | |    
T  23844496 gtttcgtccaaacaactcgcgttacttatttttgtaagttgacgatataaaagataaaagggttagaaatgttgcaatttttatctgtttgcaatagacc 23844397  T
Q  120 aagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgg 194  Q
    ||||||| |||||||||||| | |||| |||| ||||||||||||| ||||||||    ||||||||||||||||    
T  23844396 aagtttacctgttttggttgcataaaagtaagcagcggttaggatttttcgaatccctcctgtttatattgttgg 23844322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 27737734 - 27737526
Alignment:
Q  7 ccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaa---aagataaagggttagaaaggttacaatctttat 103  Q
    ||||||| ||| | |||||||||||||||  ||||  |||||||||||||||||||||||||||   ||||||| |||||||| || || |||| |||||    
T  27737734 ccacaaggattgttgtttcgtccaaacaattcgcgttacttatttttgtaagttgacgataaaatgaaagataa-gggttagagag-ttgcaatttttat 27737637  T
Q  104 ctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagt 203  Q
    |||||||||||| |||||||||| ||||||| |||| | |||| |||| ||||||||||||||||||||||  | |  |||||||| |||||  |||| |    
T  27737636 ctgtttgcaacagagcaagtttacctgtttttgttgcaaaaaagtaagcagcggttaggattcttcgaatcctc-cattttatattattggatattaaat 27737538  T
Q  204 aacagtaatgtc 215  Q
    ||||||||||||    
T  27737537 aacagtaatgtc 27737526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 5624732 - 5624904
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgta 141  Q
    ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |||| |||||||||||| || | |||| ||||| | | ||||||||| |    
T  5624732 acttatttttgtaagtttgacgatagaaaagttaa-gggttagaaaggttgcaatttttatctgtttgtaatagagca-gtttaccggcttttggttgca 5624829  T
Q  142 gaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    ||||| |||| ||||||||||||||||||||||  |  |  | |||||||||||| |||| ||||||||||||||    
T  5624830 gaaaagtaagcagcggttaggattcttcgaatctcccataatcatattgttggacattaaataacagtaatgtcg 5624904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 23232031 - 23231862
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatcttta 102  Q
    |||||| ||||||| | | |||||||||||||  ||||  ||||||||||||||||| ||||||| ||||| ||| || ||||||   || |||| ||||    
T  23232031 tatccataagaattgtcggttcgtccaaacaattcgcgttacttatttttgtaagtttgacgatataaaagttaacgg-ttagaagtcttgcaat-ttta 23231934  T
Q  103 tctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||| ||||| ||||  |||||||||| ||||||| |||| | || |||||||||||||||||    
T  23231933 tctgtttgcaacagagcaaatttacttgttttggttatagaaaagtaagcaacgtttaggattcttcgaatc 23231862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 22813678 - 22813605
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattct 167  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||    
T  22813678 caatttttatttgtttgcaacaaagcaagtttacctgttttggttgcagaaaagtaagtagcggttatgattct 22813605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 27124500 - 27124325
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtaga 143  Q
    ||||||||||| || ||||||||| |||| |||| |||||| ||   || |||| ||||| ||||||||||| |||||||||| |||| ||||||| |||    
T  27124500 acttatttttg-aacttgacgatataaaacataa-gggttaaaagacttccaatttttatatgtttgcaacagagcaagtttacctgtcttggttgcaga 27124403  T
Q  144 aaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||| |||| |||||||| ||||||| |||||  | || | |||||| |||||  ||||||||||||||||||| |||||||    
T  27124402 aaagtaagcagcggttaagattctttgaatc--ccct-tatatattattggatattaagtaacagtaatgtcgcgtttatt 27124325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 1635110 - 1635232
Alignment:
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtt 199  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| |||  ||||||||||||||||||||||  ||||  | ||  |||||||  ||    
T  1635110 ttatctgtttgcaacaaagcaagttaca-tgttttggttgtagaaaagtaaacagcggttaggattcttcgaatctccgctaatgattatgttggatatt 1635208  T
Q  200 aagtaacagtaatgtcgtgtttat 223  Q
    || || |||| |||||||||||||    
T  1635209 aaatagcagtcatgtcgtgtttat 1635232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 14079416 - 14079285
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| |||||||||||||||||||| ||||||  || |||| ||||  |||||| |||| ||||||||| |||||||||||   | || |||||||||||    
T  14079416 caatttttatctgtttgcaacaaaggaagttttcctatttttggttacagaaaagtaagcagcggttagaattcttcgaattccccctatttatattgtt 14079317  T
Q  193 ggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||  |||| ||||||| ||||||||||||||    
T  14079316 ggatattaaataacagtcatgtcgtgtttatt 14079285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 24657421 - 24657346
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| ||| | |||| |||||||||||| |||||| |||| ||||||||| ||||||||||||    
T  24657421 tttatctgtttgcaacagagcgaatttacctgttttggttgcagaaaagtaagcagcggttagaattcttcgaatc 24657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 12183287 - 12183187
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttg 193  Q
    |||| ||||||||||||||||| |||||||| | |||||||||||  |||||| |||| | ||||||||||||||||||||  | || ||||||||||||    
T  12183287 caatgtttatctgtttgcaacatagcaagtt-acctgttttggttacagaaaagtaagcaacggttaggattcttcgaatc-cccctatttatattgttg 12183190  T
Q  194 gac 196  Q
    |||    
T  12183189 gac 12183187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 21841663 - 21841577
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| |||||||| |||||||||||||||||||  ||||||||||| |  |||  |||||| |||||||||||||||||||    
T  21841663 aggttgcaatttttatctgattgcaacaaagcaagtttacttgttttggttgcaagaaatgaagtagtggttaggattcttcgaatc 21841577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 25781913 - 25781999
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||||||||||||||| |||||||||| || ||||||||| |||||| |||  ||  ||||||||||||||||||    
T  25781913 aggttgcaatttttatctgtttgcaacagagcaagtttacctattttggttgcagaaaagtaaacagtagttaggattcttcgaatc 25781999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 20005893 - 20005795
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||| || |||| ||||| ||||||||||| ||| |||||| ||| ||||||||| |||||  || | |||||||| |||||||||||||    
T  20005893 aagggttagaaagcttgcaatttttatttgtttgcaacagagcgagtttacctgtttttggttgcagaaaggtatgcagcggttaagattcttcgaatc 20005795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 22413014 - 22412940
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaat 173  Q
    |||||||||||| |||| ||| | |||| |||||||||||  || ||| ||||||||||||||||||||||||||    
T  22413014 tttatctgtttgtaacagagcgaatttacctgttttggttacaggaaagtaagtagcggttaggattcttcgaat 22412940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17827143 - 17826924
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctt 100  Q
    ||||||||||| | ||| | ||||| |||||||||  ||||  |||||||||| |   ||||| ||| ||||||||| |||||| ||  ||| |||| ||    
T  17827143 tcgtatccacatggattgtcgtttcttccaaacaattcgcgttacttatttttttt--ttgacaatataaaagataa-gggttaaaagagttgcaatttt 17827047  T
Q  101 tatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtt 199  Q
    ||| ||||||||||| |||| |||||  |||||| ||||| |||||| |||| | ||||||| |||||| ||||   |  |||||||||||||||   ||    
T  17827046 tatatgtttgcaacatagca-gtttacttgtttttggttgcagaaaagtaagcaacggttagaattctttgaattccct-tgtttatattgttgggtatt 17826949  T
Q  200 aagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||||||||||| |||||||    
T  17826948 aagtaacagtaatgtcgcgtttatt 17826924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 17382215 - 17382275
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggtt 159  Q
    ||||||||||||||||| ||||||||||  ||||||||||| |||||| |||| |||||||    
T  17382215 tttatctgtttgcaacagagcaagtttacatgttttggttgcagaaaagtaagcagcggtt 17382275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 19244726 - 19244794
Alignment:
Q  104 ctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaat 173  Q
    |||||||||||| |||||||| | ||| ||||||||||||||| ||||||| ||| ||||||||| ||||    
T  19244726 ctgtttgcaacagagcaagtt-acctggtttggttgtagaaaagtaagtagtggtaaggattctttgaat 19244794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 11136031 - 11136119
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaa-taagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||||||||||||||| ||| |  ||| ||||||| ||||| | ||||| |||| ||||||||||||||||||||||    
T  11136031 aggttgcaatttttatctgtttgcaacagagcgaacttacctgtttttggttgcaaaaaaagtaagaagcggttaggattcttcgaatc 11136119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 4339874 - 4339951
Alignment:
Q  91 ttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttc 169  Q
    ||||||| ||||| |||||||||| ||||||||| | |||||||||||| |||||| |||  |||||| ||| ||||||    
T  4339874 ttacaatatttatttgtttgcaactaagcaagtt-acctgttttggttgcagaaaagtaaccagcggtcagggttcttc 4339951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 20145092 - 20144978
Alignment:
Q  82 ttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttg-gttgtagaaaaataagtagcggttaggattcttcgaatcaacgct 180  Q
    |||||||| || |||| ||||| ||||||||||| || |||||||  | ||||  |||| ||||||  ||| |||||| |||||||||||||||  | ||    
T  20145092 ttagaaagcttgcaatttttatatgtttgcaacagagaaagtttacgtatttttagttgcagaaaagcaagcagcggtaaggattcttcgaatcccctct 20144993  T
Q  181 gtttatattgttgga 195  Q
    | |||||||||||||    
T  20144992 ggttatattgttgga 20144978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 22187747 - 22187861
Alignment:
Q  82 ttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttg-gttgtagaaaaataagtagcggttaggattcttcgaatcaacgct 180  Q
    |||||||| || |||| ||||| ||||||||||| || |||||||  | ||||  |||| ||||||  ||| |||||| |||||||||||||||  | ||    
T  22187747 ttagaaagcttgcaatttttatatgtttgcaacagagaaagtttacgtatttttagttgcagaaaagcaagcagcggtaaggattcttcgaatcccctct 22187846  T
Q  181 gtttatattgttgga 195  Q
    | |||||||||||||    
T  22187847 ggttatattgttgga 22187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 14637026 - 14637110
Alignment:
Q  111 caacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    ||||| |||||||||| ||||||| ||||| |||||| |||| ||||  ||||||||||||||||  | || ||||||||||||||    
T  14637026 caacagagcaagtttacctgtttttggttgcagaaaagtaagcagcgaataggattcttcgaatc-cccctatttatattgttgga 14637110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 17883762 - 17883670
Alignment:
Q  131 ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||| |||||| |||| |||| ||| |||||||| ||||  | | |||||||||||||||  ||||||||||  |||||||||| ||||    
T  17883762 ttttggttggagaaaagtaagcagcgtttatgattcttcaaatcccc-cagtttatattgttggatattaagtaacaacaatgtcgtgtatatt 17883670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24245595 - 24245372
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaa-gggttagaaaggttacaatct 99  Q
    ||||||||||||| ||| | |||||||||||||||| ||||  |||||||||||||||||||  ||| |||||||||| |||||||||||||| | || |    
T  24245595 tcgtatccacaaggattgtcgtttcgtccaaacaactcgcgttacttatttttgtaagttgagaatataaaagataaaagggttagaaaggtttcgattt 24245496  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtt 199  Q
    |||| ||||| |||||||||||||||| ||||||| |||| |||||| |||| | ||||||||||||||||||||  | |||||||||||||||||  ||    
T  24245495 ttatttgtttccaacaaagcaagtttacctgttttagttgcagaaaagtaagcaacggttaggattcttcgaatc-cccctgtttatattgttggatatt 24245397  T
Q  200 aagtaacagtaatgtcgtgtttatt 224  Q
    ||||||| | ||||||| |||||||    
T  24245396 aagtaactgcaatgtcgcgtttatt 24245372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 20744676 - 20744529
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    ||||||||||||||||| ||||||| ||||| ||| |||||||| || || |||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  20744676 acttatttttgtaagtttgacgatataaaagttaa-gggttagagag-ttgcaatttttatctgtttgcaacatagcaagtttacctgttttggttgtag 20744579  T
Q  143 aaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| |||| ||||||||||||||||||||||    ||||||||||||||    
T  20744578 aaaagtaagcagcggttaggattcttcgaatcccacctgtttatattgtt 20744529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 17432033 - 17432145
Alignment:
Q  103 tctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaag 202  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||| |||| |||||||||||||||||||||   |  ||||||||||||||||  ||||     
T  17432033 tctgtttgcaacagagcaagtttacttgttttggttgcagaaaagtaagcagcggttaggattcttcgaataccctatgtttatattgttggatattaaa 17432132  T
Q  203 taacagtaatgtc 215  Q
    |||||||||||||    
T  17432133 taacagtaatgtc 17432145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 20315481 - 20315307
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgt-aagttgacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| |  ||||||||||||||  |||| ||||||||||| | |||||||||||| ||||  ||| || | |  ||  || |||| |    
T  20315481 tcgtatccacatggattatcctttcgtccaaacaattcgcgtaacttatttttattaagttgacgatataaaatttaagggataaagaaacttgcaattt 20315382  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||||||||||||||||||||||  ||||||||||| | || | |||| |||| ||||| |||||||||||    
T  20315381 ttatctgtttgcaacaaagcaagtttacatgttttggttgcaaaatagtaagaagcgattagggttcttcgaatc 20315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 28664903 - 28664983
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | |||| |||||||||||| ||||||||||| | |||||| |||||||||||||    
T  28664903 caatttttatctgtttgcaacagagcgaatttacctgttttggttgcagaaaaataagcaacggttaagattcttcgaatc 28664983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 36175275 - 36175354
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||| |||||||| ||||||| |||||    
T  36175275 caatttttatctgttttcaacaaagcaagtt-acctgttttggttgtagaaaagtaagaagcggttatgattctttgaatc 36175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 20564050 - 20563957
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttat 186  Q
    |||| ||||||||||||||||| ||||| ||||  |||||| ||||| |||||| |||| ||| ||||||||||||||||||| | ||||||||    
T  20564050 caatttttatctgtttgcaacagagcaaatttacttgtttttggttgcagaaaagtaagaagcagttaggattcttcgaatcacctctgtttat 20563957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 34128788 - 34128857
Alignment:
Q  105 tgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||| | |||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||    
T  34128788 tgtttgcaatagagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatc 34128857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 20858810 - 20858894
Alignment:
Q  90 gttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||| |||||| |||||||||||||| | |||| || ||||||||| | |||| |||| |||||||||||||| |||||||    
T  20858810 gttacaatttttatcggtttgcaacaaagcgaatttacctattttggttgcataaaagtaagcagcggttaggattcgtcgaatc 20858894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 24140577 - 24140657
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||| ||| ||| |||||||||| || ||||||||| |||||| |||| | ||||||||||||||| ||||    
T  24140577 caatttttatctgtgtgcgacagagcaagtttacctattttggttgcagaaaagtaagcaacggttaggattcttcaaatc 24140657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 19004234 - 19004146
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttt 133  Q
    ||||||||||||||||| ||||||| ||||||||| |||||| | || || |||| |||||||||||||||||  ||||||||| ||||||    
T  19004234 acttatttttgtaagtttgacgatataaaagataa-gggttaaatag-ttgcaatttttatctgtttgcaacagggcaagtttatctgttt 19004146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 16523761 - 16523680
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttg-gttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | |||| |||||||  ||| ||||||| |||| |||||||||||||||| |||||    
T  16523761 caatttttatctgtttgcaacagagcgaatttacctgttttttgttatagaaaagtaagcagcggttaggattctttgaatc 16523680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 39434620 - 39434677
Alignment:
Q  118 gcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    ||||||||| |||||||| ||| |||||| |||| | |||||||||||||||||||||    
T  39434620 gcaagtttacctgttttgtttgcagaaaagtaagcaacggttaggattcttcgaatca 39434677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 26835796 - 26835870
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| ||| | |||| ||||||| |||| |||||| || | ||| ||||||||||||||||||    
T  26835796 tttatctgtttgcaacagagcgaatttacctgtttt-gttgcagaaaagtatgcagcagttaggattcttcgaatc 26835870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 15375853 - 15375732
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaact-gttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||| ||||||||||| ||||||||   ||  ||||||||| | |||| |||||| ||||||||||||||||||||  | || |  ||||||||    
T  15375853 caatttttatttgtttgcaacagagcaagttcgcctatttttggttgcataaaagtaagtaacggttaggattcttcgaatc-cccctatacatattgtt 15375755  T
Q  193 ggacgttaagtaacagtaatgtc 215  Q
    |||  |||||||||| |||||||    
T  15375754 ggatattaagtaacactaatgtc 15375732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 17315074 - 17314990
Alignment:
Q  90 gttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||| ||||||| ||||||| | ||| |  ||| |||||||||||| | |||| |||| |||||||| ||||||| |||||    
T  17315074 gttacaatttttatctttttgcaatagagcgaagttacctgttttggttgcaaaaaagtaagcagcggttaagattctttgaatc 17314990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 24852121 - 24852050
Alignment:
Q  102 atctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||||||||| |||||  ||| |||||||||||||||||  || || || ||||||||||||| |||||    
T  24852121 atctgtttgcaacagagcaaagttacctgttttggttgtagaatgat-agcagtggttaggattctttgaatc 24852050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 24114313 - 24114111
Alignment:
Q  21 gtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagca 120  Q
    ||||||||||||||||  |||  |||||||||||||||||||||||| ||||||||| |||||| ||||||| |||| |||||||||||||| || ||||    
T  24114313 gtttcgtccaaacaacttgcgttacttatttttgtaagttgacgatataaaagataa-gggttataaaggttgcaatttttatctgtttgcagcagagca 24114215  T
Q  121 agtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtt 220  Q
    |||||| ||||||||||    ||||| |||| ||||||||||||||||||||||  | || ||||||||||||||   ||||||||||||||| || |||    
T  24114214 agtttacctgttttggtatctgaaaagtaagcagcggttaggattcttcgaatcccccctatttatattgttggataataagtaacagtaatgacgcgtt 24114115  T
Q  221 tatt 224  Q
    ||||    
T  24114114 tatt 24114111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 24110670 - 24110497
Alignment:
Q  49 tttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaat 148  Q
    ||||||||||||||||||| |||| |||| |||||||||| ||| |||| ||||||||||||||||| || ||||||| |||||||||||| |||||| |    
T  24110670 tttttgtaagttgacgatataaaacataa-gggttagaaaagttgcaat-tttatctgtttgcaacagaggaagtttatctgttttggttgcagaaaagt 24110573  T
Q  149 aagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||| || |||||||||| ||||||||  | |||||||||||||||||   |||||||||||||||||| |||||||    
T  24110572 aagcaggggttaggattattcgaatcccccctgtttatattgttggataataagtaacagtaatgtcgcgtttatt 24110497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 26394644 - 26394527
Alignment:
Q  106 gtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaa 205  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||  | || ||||||||||| ||  |||| |||    
T  26394644 gtttgcaacaaagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatc-cccctatttatattgttagatattaaataa 26394546  T
Q  206 cagtaatgtcgtgtttatt 224  Q
    ||||||||||| |||||||    
T  26394545 cagtaatgtcgcgtttatt 26394527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24269645 - 24269868
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| | |||||||||||||||  | |   | ||||||||||||||| |||| || |||| |||| | ||| |||  ||| ||||||    
T  24269645 tcgtatccacagggattgtcgtttcgtccaaacaattcacattatttatttttgtaagtttgacggtataaaaaataa-gagtttgaatagttgcaatct 24269743  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgt 198  Q
    |||||||||||||||| || | ||||| ||||||| ||||| |||||| |||| ||||||||||||||||||||||  | |||||||||||||||||  |    
T  24269744 ttatctgtttgcaacagagta-gtttacctgtttttggttgcagaaaagtaagcagcggttaggattcttcgaatcccccctgtttatattgttggatat 24269842  T
Q  199 taagtaacagtaatgtcgtgtttatt 224  Q
    ||| ||  |||||||||| |||||||    
T  24269843 taaatataagtaatgtcgcgtttatt 24269868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 29382412 - 29382243
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| | ||||| |||||||||   |||  ||||||||||||||||| ||||||| ||||| ||| || |||||||| || |||| |    
T  29382412 tcgtatccacagggattgtcgtttcatccaaacaatttgcgttacttatttttgtaagtttgacgatataaaagttaatgg-ttagaaagcttgcaattt 29382314  T
Q  100 ttatctgtttgcaacaaagcaagtttaact-gttttggttgtagaaaaataagtagcggttaggattcttc 169  Q
    |||||||||||||||| ||||||| || ||  ||||||||| |||||| |||| || ||||||||||||||    
T  29382313 ttatctgtttgcaacatagcaagtgtacctatttttggttgcagaaaagtaagcagtggttaggattcttc 29382243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 23893171 - 23893091
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||| |||||| ||| |||  |||||||||||| |||||    
T  23893171 caatttttatctgtttgcaacaaagcaaatttacctgttttggttgcagaaaagtaactagtagttaggattctttgaatc 23893091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 18448550 - 18448384
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaag-gttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgta 141  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||  || || | ||||||||||||||||| |||||| ||| ||| ||||||||| |    
T  18448550 acttatttttataagttgacgatataaaagataaatggttagaaagtcttgcagtttttatctgtttgcaacagagcaag-ttacctgtttttggttgca 18448452  T
Q  142 gaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagt 209  Q
     |||| |||| | |||||| ||||||| | |||    || | ||||||||||||  ||||||||||||    
T  18448451 taaaagtaagcaacggttatgattctttgtatccctcctatatatattgttggatattaagtaacagt 18448384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13315043 - 13314821
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaa---aagataaagggttagaaaggttacaat 97  Q
    ||||||||||| | ||||| |||||||||||||||  ||||  |||||||||  ||||||||||||| ||   |||||||| | ||||| || || ||||    
T  13315043 tcgtatccacatggatttttgtttcgtccaaacaattcgcgttacttatttta-taagttgacgatataataaaagataaacg-ttagagag-ttgcaat 13314947  T
Q  98 ctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggac 196  Q
     ||||| ||||||||||  | ||| |||| ||||||| ||||| |||||| |||| | |||||| |||||||||||||  | || ||||||||||||||     
T  13314946 ttttatatgtttgcaactgaacaaatttacctgtttttggttgcagaaaagtaagcaacggttaagattcttcgaatc--ccctatttatattgttggat 13314849  T
Q  197 gttaagtaacagtaatgtcgtgtttatt 224  Q
     |||| ||||| | |||||| |||||||    
T  13314848 attaaataacattcatgtcgcgtttatt 13314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 17101869 - 17101733
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttat 186  Q
    ||||| |||| ||||||||||||||||| |||||||||| ||| ||||| ||| | |||| |||| || ||||||||||| || ||||  |  |||||||    
T  17101869 aggttccaatttttatctgtttgcaacagagcaagtttacctgtttttgattgcaaaaaagtaagcagtggttaggattcatcaaatc-cccatgtttat 17101771  T
Q  187 attgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||||||||  |||||| ||||| |||||| |||||||    
T  17101770 attgttggatattaagtgacagtgatgtcgcgtttatt 17101733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 16404042 - 16404122
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||||| ||| | |||| || |||||| || ||||||||||| ||||||||||||||||||||||    
T  16404042 caatttttatttgtttgcaacagagcgaatttacctattttggctgcagaaaaataagcagcggttaggattcttcgaatc 16404122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 18569201 - 18569276
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| ||| ||||||  ||||||||||| |||||| |||| |||||||| |||| || |||||    
T  18569201 tttatctgtttgcaacatagcgagtttacttgttttggttgcagaaaagtaagcagcggttacgattttttgaatc 18569276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 25226259 - 25226376
Alignment:
Q  77 aagggttagaaagg-ttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||||||||||||  || |||| ||||| ||||||||| | ||||||||||  ||| ||||||||| |||| ||||||||  |||||||| || |||||     
T  25226259 aagggttagaaagtcttccaatttttatatgtttgcaatagagcaagtttacatgtcttggttgtaaaaaagtaagtagcaattaggattgtttgaatcc 25226358  T
Q  176 acgctgtttatattgttg 193  Q
     |  ||||||||||||||    
T  25226359 cccttgtttatattgttg 25226376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27659493 - 27659569
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataa 77  Q
    ||||||| ||||| ||| | ||||||||||||||   || |  |||||||||||||||||||||||| |||||||||    
T  27659493 tcgtatctacaaggattgtcgtttcgtccaaacattccgagttacttatttttgtaagttgacgatataaaagataa 27659569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13697903 - 13697971
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaa 72  Q
    ||||||||||||| ||||| ||||||||||||||||  |||  ||||||||   ||||||||||||| ||||    
T  13697903 tcgtatccacaaggattttcgtttcgtccaaacaacctgcgttacttattt---taagttgacgatataaaa 13697971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 14528291 - 14528355
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggtt 159  Q
    |||| |||| ||||||||||||||||||| ||| ||| |||||||| |||||| |||| |||||||    
T  14528291 caatttttagctgtttgcaacaaagcaag-ttacctggtttggttgcagaaaagtaagcagcggtt 14528355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 17675637 - 17675464
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaa-gggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||| ||    
T  17675637 acttatttttgtaagttgacgatgtaaaagataaaagggttagaaaggttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcag 17675538  T
Q  143 aaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    ||||||||  ||||||||| ||| |||||||   | |||||||||||||||||  ||||||||||  |||||||    
T  17675537 aaaaataaacagcggttagaatttttcgaattccccctgtttatattgttggatattaagtaacaacaatgtcg 17675464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 27909127 - 27908946
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaa-gggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgta 141  Q
    ||||||||||||||||| ||||||| ||||| |||| ||||||||| | || |||| ||||||||||||||||| |||||||||| |||||||||||| |    
T  27909127 acttatttttgtaagtttgacgatataaaagttaaaagggttagaacg-ttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgca 27909029  T
Q  142 gaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||||| |||| ||||||||||||||||||||||  | || ||||||||||||||  |||||||||| |||||| | |||||||    
T  27909028 gaaaattaagcagcggttaggattcttcgaatcccccctatttatattgttggatattaagtaacaataatgttgcgtttatt 27908946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 17635783 - 17635610
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaa-gggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||| ||    
T  17635783 acttatttttgtaagttgacgatgtaaaagataaaagggttagaaaggttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcag 17635684  T
Q  143 aaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    | ||||||  ||| ||||| ||| |||||||   | |||||||||||||||||  ||||||||||  |||||||    
T  17635683 ataaataaacagcagttagaatttttcgaattccccctgtttatattgttggatattaagtaacaacaatgtcg 17635610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 28925614 - 28925764
Alignment:
Q  46 ttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaa 144  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| || |||| ||||| ||||||||||| |||||||||| |||||||||||| ||||    
T  28925614 ttatttttgtaagtttgacgatataaaagataaagggttagaaagcttgcaatttttatttgtttgcaacatagcaagtttacctgttttggttgcagaa 28925713  T
Q  145 aaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    || |||| || |||||||||||||||||||  |  || |||||||||||||    
T  28925714 aagtaagcagaggttaggattcttcgaatcccctatgcttatattgttgga 28925764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 25618697 - 25618823
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttg 193  Q
    |||| ||||||||||||||||| || ||||||| |||||||||||| |||||| |||| ||||||| | ||||||||||||  | |  ||||||||||||    
T  25618697 caatttttatctgtttgcaacagagaaagtttacctgttttggttgcagaaaagtaagcagcggttcgaattcttcgaatc-cccccatttatattgttg 25618795  T
Q  194 gacgttaagtaacagtaatgtcgtgttt 221  Q
    ||  |||| |||||||||||||||||||    
T  25618796 gatattaaataacagtaatgtcgtgttt 25618823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 26603317 - 26603198
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||  | || |||||||||||    
T  26603317 caatttttatctgtttgcaacagagca-gtttacctgtttttggttgtagaaaagtaagcagcggttaggattcttcgaatc-cccctatttatattgtt 26603220  T
Q  193 ggacgttaagtaacagtaatgt 214  Q
    |||  |||| ||||||||||||    
T  26603219 ggatattaaataacagtaatgt 26603198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 30411802 - 30411930
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttat 186  Q
    ||||| |||| ||||||||||||||||| ||||||||||  |||||| ||||| |||||| |||| ||||||||||||| ||||||||  | ||||| ||    
T  30411802 aggttgcaatttttatctgtttgcaacagagcaagtttacatgtttttggttgcagaaaagtaagcagcggttaggatttttcgaatc-cccctgttcat 30411900  T
Q  187 attgttggacgttaagtaacagtaatgtcg 216  Q
    |||||||||  | |||||||| ||||||||    
T  30411901 attgttggatatcaagtaacaataatgtcg 30411930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 17743527 - 17743333
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttga-cgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| | |||||||||||||||  || |  ||||||||||| ||||| | ||||| ||||| ||| |||||||| || || |||| |    
T  17743527 tcgtatccacatggattatcgtttcgtccaaacaattcgtgttacttatttttgcaagtttaacgatataaaagttaa-gggttagagag-ttgcaattt 17743430  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||||||  |||  |||||||||||| || |||||  | | |||||||||||||||    
T  17743429 ttatctttttgcaactaagcaagtttacctgtttttggttgtagaaaaggaagccgcggttaggattatttgaatctcctccgtttatattgttgga 17743333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 29143091 - 29143171
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| |||||||||| || |||||||||||||||| |||  |||||||| |||||||||||||    
T  29143091 caatttttatctgtttgcaacagagcaagtttacctattttggttgtagaaaagtaaacagcggttaagattcttcgaatc 29143171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 29719206 - 29719060
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgt-tttggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||||||||| || || |||| ||||| ||| ||||||| |||||||||| |||| |||||||| |||||| |||| ||| ||||||||||||||||||     
T  29719206 aagggttagagag-ttgcaatttttatatgtatgcaacagagcaagtttacctgtgtttggttgcagaaaagtaagcagcagttaggattcttcgaatcc 29719108  T
Q  176 acgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
     | || ||||| ||||| ||  |||| |||||||||||||| |||||||    
T  29719107 cctctatttat-ttgttagaaattaaataacagtaatgtcgcgtttatt 29719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 17349484 - 17349604
Alignment:
Q  89 ggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttata 187  Q
    |||| |||| ||||||||||||||||| ||||||||||  || ||||||||| | |||| |||| |||||| || ||||||||||||  | || ||||||    
T  17349484 ggttgcaatttttatctgtttgcaacagagcaagtttacttgtttttggttgcaaaaaagtaagcagcggtcagaattcttcgaatcccctctatttata 17349583  T
Q  188 ttgttggacgttaagtaacag 208  Q
    ||||||||  |||| ||||||    
T  17349584 ttgttggatattaaataacag 17349604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 25196157 - 25196229
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcga 171  Q
    ||||| ||||||||||| |||||||||| |||||||||||| | |||| |||| || ||||||||||||||||    
T  25196157 tttatatgtttgcaacatagcaagtttacctgttttggttgcaaaaaagtaagcagtggttaggattcttcga 25196229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 25530577 - 25530657
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | |||| |||||||||||| | || | |||| ||||||||||||||||||||||    
T  25530577 caatttttatctgtttgcaacagagcgaatttacctgttttggttgcaaaatagtaagcagcggttaggattcttcgaatc 25530657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 15339363 - 15339495
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||||||||| || || |||| ||||| ||||||||||| |||||||||| ||| |||| |||| |||||| |||| ||| ||||||||||||| ||||     
T  15339363 aagggttagagag-ttgcaatttttatttgtttgcaacagagcaagtttatctgttttttgttgcagaaaagtaagcagcagttaggattcttcaaatcc 15339461  T
Q  176 acgctgtttatattgttggacgttaagtaacagt 209  Q
     | || ||||||||| || | ||||| |||||||    
T  15339462 cctctatttatattgctgaatgttaaataacagt 15339495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 31804908 - 31804791
Alignment:
Q  44 acttatttttgtaagttgacgat---aaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttg 139  Q
    |||||||||||||||||||||||   | ||||||| |||||||||| | ||| |||| ||||| ||||||||| ||||||| |||| ||| |||||||||    
T  31804908 acttatttttgtaagttgacgatataataaaagat-aagggttagaga-gttgcaatttttatttgtttgcaataaagcaaatttacctgtttttggttg 31804811  T
Q  140 tagaaaaataagtagcggtt 159  Q
     |||||| |||| |||||||    
T  31804810 cagaaaagtaagcagcggtt 31804791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 32085605 - 32085678
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattctt 168  Q
    |||| ||||||||||||||||| |||||| ||| ||| |||||||| |||||| |||| ||||||||||| ||||    
T  32085605 caatttttatctgtttgcaacagagcaag-ttacctggtttggttgcagaaaagtaagcagcggttaggactctt 32085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 25887861 - 25887731
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||||||||||||| |||||||| | || |||| ||||| |||||| |||  |||| ||| |||||||| ||||  | || |||||||||||    
T  25887861 caatttttatctgtttgcaacagagcaagtt-acctatttttggttgcagaaaagtaaccagcgattatgattcttcaaatcccccctatttatattgtt 25887763  T
Q  193 ggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||  |||| |||  ||||||||| |||||||    
T  25887762 ggatattaaataattgtaatgtcgcgtttatt 25887731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 23933502 - 23933423
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| |||||| |||  || |||||||  | |||| |||| |||||||||||||||| |||||    
T  23933502 caatttttatctgtttgcaacagagcaag-ttacttggtttggtttcacaaaagtaagcagcggttaggattctttgaatc 23933423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 25535403 - 25535483
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||| |||||||||  |  | |||| |||||||||||| | |||| |||| ||||||| ||||||||||||||    
T  25535403 caatttttatctatttgcaacagcgtgaatttacctgttttggttgcaaaaaagtaagcagcggttgggattcttcgaatc 25535483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 45553271 - 45553349
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| |||||||| | |||||||||||| ||||   || | |||||||||||||||| |||||    
T  45553271 caatttttatctgtttgcaacatagcaagtt-acctgttttggttgcagaacgtta-gcagcggttaggattctttgaatc 45553349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 12208652 - 12208823
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaa-gggttagaaaggttacaatcttta 102  Q
    |||||||| | ||| | |||||||||||||||  ||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| || | || |    
T  12208652 tatccacatggattgtcgtttcgtccaaacaattcgcgttacttatttttgtaagttgacgatataaaagataaaagggttagaaaggtttcagttttaa 12208751  T
Q  103 tctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||| |||||||||| ||||||| | || |||||| |||| ||||||||||||||||||||||    
T  12208752 tctgtttgcaacagagcaagtttacctgttttagctgcagaaaagtaagcagcggttaggattcttcgaatc 12208823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 16179098 - 16179267
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtag 142  Q
    |||||||||||||||||||||||| |||| |||| ||||||||    || |||| |||||||| |||||||| |||||||||| || |||| ||||| ||    
T  16179098 acttatttttgtaagttgacgatataaaatataa-gggttagatgtcttgcaatttttatctgattgcaacagagcaagtttacctatttttggttgcag 16179196  T
Q  143 aaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    |||| |||| ||||||||||||||   ||||| || |||||||||||||||||  |||||||||||||||||||    
T  16179197 aaaagtaagcagcggttaggattc---gaatccaccctgtttatattgttggatattaagtaacagtaatgtcg 16179267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9401553 - 9401761
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaa---aagataaagggttagaaaggttacaat 97  Q
    ||||||||||| ||||| | |||||||||||||||  ||||  ||||||||||||||||||  |||| ||   ||||||| || ||||| || || ||||    
T  9401553 tcgtatccacatgaattgtcgtttcgtccaaacaattcgcgttacttatttttgtaagttgttgatataataaaagataacgg-ttagagag-ttgcaat 9401650  T
Q  98 ctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacg 197  Q
     ||||||||||||||||| || ||||||| |||||||||||  | |||| |||||||||||||||||||||||||||  | || |||||||||| |||      
T  9401651 ttttatctgtttgcaacagagtaagtttacctgttttggttacaaaaaagtaagtagcggttaggattcttcgaatcccctctatttatattgtaggata 9401750  T
Q  198 ttaagtaacag 208  Q
    |||| ||||||    
T  9401751 ttaaataacag 9401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 25405681 - 25405516
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctt 100  Q
    ||||||||||||| ||| | ||||||||||||||   | ||  |||||||||||||||||||||||| ||||| | ||||||||||||| || |||| ||    
T  25405681 tcgtatccacaaggattgtcgtttcgtccaaacagttcacgttacttatttttgtaagttgacgatataaaagtttaagggttagaaagcttgcaatttt 25405582  T
Q  101 tatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattc 166  Q
    ||| ||||||||||| ||||||||||  || ||||||||| || ||| |||| ||||||||||||||    
T  25405581 tatttgtttgcaacagagcaagtttacttgtttttggttgcag-aaagtaagcagcggttaggattc 25405516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 17610307 - 17610139
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| | |||||||||||||||  | ||  ||||||||||||||||| ||||||| ||||| |||||| |||||||| ||  ||| |    
T  17610307 tcgtatccacatggattgtcgtttcgtccaaacaattcacgttacttatttttgtaagtttgacgatataaaagttaaagg-ttagaaagcttgtaattt 17610209  T
Q  100 ttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattctt 168  Q
    |||| ||||||||||| |||||||||| ||| ||||||||| |||||| |||| ||||||||||||||||    
T  17610208 ttatatgtttgcaacagagcaagtttacctgtttttggttgcagaaaagtaagcagcggttaggattctt 17610139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 21449218 - 21449332
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||||||||||||| |||||||||||||| |||||| || |||||| |||| ||||||||||||||||||||||    ||||||||||||||    
T  21449218 caatttttatctgtttgcaacatagcaagtttaactgtttttggatgcagaaaagtaagcagcggttaggattcttcgaatccctcctgtttatattgtt 21449317  T
Q  193 ggacgttaagtaaca 207  Q
    |||  ||||||||||    
T  21449318 ggatattaagtaaca 21449332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 21666659 - 21666486
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttac-aatct 99  Q
    ||||||||||| | ||| |  ||||||||||||||  | ||  |||||||||| ||||||||||||| ||||||||| |||||| ||||  ||  ||| |    
T  21666659 tcgtatccacatggattgtcctttcgtccaaacaattctcgttacttatttttataagttgacgatataaaagataa-gggttaaaaagactagtaattt 21666561  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||||||||| | | |||||||| ||||||||||||||||||| |||| |  |||||||||||||||||||    
T  21666560 ttatctgtttgcaagacaacaagtttacctgttttggttgtagaaaagtaagcaatggttaggattcttcgaatc 21666486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 15543997 - 15543802
Alignment:
Q  21 gtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagca 120  Q
    |||||||||||||||  || |  |||||||||| ||| ||||||||| ||||||||| |||||| ||  ||| |||| ||||| ||||||||||| || |    
T  15543997 gtttcgtccaaacaattcgtgttacttatttttttaatttgacgatataaaagataa-gggttaaaagagttgcaatttttatttgtttgcaacatagta 15543899  T
Q  121 agtttaactgttttg-gttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    |||||| |||||||  |||| |||||| |||| | ||||||||||||||||||||  |  |||||||| |||||||  | |||||||| | ||||||    
T  15543898 agtttacctgttttttgttgcagaaaagtaagcaacggttaggattcttcgaatcccccttgtttatactgttggatatcaagtaacaatcatgtcg 15543802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 16069514 - 16069440
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaat 173  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||    
T  16069514 tttatctgcttgcaacagagcaagtttacctgttttggttgtagaaaagtaagcagcagttaggattcttcgaat 16069440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 21334727 - 21334574
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaagg-ttacaatcttt-atctgtttgcaacaaagcaagtttaactgtttt-ggttgt 140  Q
    |||||||||| ||||||||||||| |||||||||| |||| |||||  ||||||| ||| |||||||||||| | |||||||| | || |||| |||||     
T  21334727 acttatttttttaagttgacgatataaaagataaatggtttgaaagtcttacaattttttatctgtttgcaaaatagcaagtt-acctatttttggttga 21334629  T
Q  141 agaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    |||||| |||  ||||||||||||||||||||||  | |||| ||||||||||||    
T  21334628 agaaaagtaaacagcggttaggattcttcgaatcccccctgtctatattgttgga 21334574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 29242642 - 29242728
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||||||||||||||| |||||||||| |||||||||||| | |||| |||| |||||||||||| ||| |||||    
T  29242642 aggttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcaaaaaagtaagaagcggttaggatactttgaatc 29242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 14779616 - 14779764
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgata--aaaaagataaagggttagaaaggttacaatcttt 101  Q
    |||||||| | ||| | ||||||||||||||   ||||  | ||||||||||||||||||||||  ||||||| ||||| |||||| |||| |||| |||    
T  14779616 tatccacagggattgtcgtttcgtccaaacatatcgcgttatttatttttgtaagttgacgatataaaaaagaaaaagg-ttagaagggttgcaattttt 14779714  T
Q  102 atctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataag 151  Q
    || ||||| ||||| | ||||||||  ||||||||||| |||||| ||||    
T  14779715 atttgtttacaacatatcaagtttacttgttttggttgaagaaaagtaag 14779764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 15807977 - 15807898
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||||| |||||||| | | |||||||||||||||||||||| |||| ||||||||||| |||||    
T  15807977 caatttttatttgtttgcaacagagcaagtt-accagttttggttgtagaaaaataagcagcgattaggattctttgaatc 15807898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 17359286 - 17359433
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||||||||| || || |||| |||||||| | |||||| ||||| |||| ||||||| ||||| | |||| ||||  |||||||||||||||||||||     
T  17359286 aagggttagagag-ttgcaatttttatctgctggcaacatagcaaatttacctgtttttggttgcataaaagtaagatgcggttaggattcttcgaatcc 17359384  T
Q  176 acgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
     | || ||||||||||||||  |||| ||||| | |||||| |||||||    
T  17359385 cctctatttatattgttggatattaaataacaatcatgtcgcgtttatt 17359433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 18825785 - 18825865
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||| ||||||||||| ||||  |||||||||||||||||| |||| |||| | ||||||||| |||||    
T  18825785 caatttttatctgtttacaacaaagcaaatttacttgttttggttgtagaaaagtaagcagcgataaggattctttgaatc 18825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 22623045 - 22623112
Alignment:
Q  107 tttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||| |||||||||| |||||||||||| |||||| |||| ||| ||||||||||||| ||||    
T  22623045 tttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagctgttaggattcttcaaatc 22623112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 18529149 - 18529079
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggat 164  Q
    |||| ||||||  ||||||||| |||||||||| ||||||||||||||||||| |||| || |||||||||    
T  18529149 caatttttatcaatttgcaacagagcaagtttacctgttttggttgtagaaaagtaagcagtggttaggat 18529079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 18100985 - 18100851
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaa 176  Q
    ||||||||||||  || |||| ||||||||||||||||| |||||| |||  ||||||||||| |||||| |||| |||||||| |||| || |||||      
T  18100985 aagggttagaaa--ttgcaatttttatctgtttgcaacatagcaag-ttacatgttttggttgcagaaaagtaagcagcggttatgattatttgaatccc 18100889  T
Q  177 cgctgtttatattgttggacgttaagtaacagtaatgtc 215  Q
    || | ||||| ||||||||  |||| ||||||| |||||    
T  18100888 cg-tatttattttgttggatattaaataacagtcatgtc 18100851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 727591 - 727677
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||| ||||||||||| || || |||| |||||||||||| |||||   ||| |||||||| |||||||||||||    
T  727591 aggttgcaatttttatttgtttgcaacatagaaaatttacctgttttggttgcagaaagtaaagcagcggttaagattcttcgaatc 727677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 16916904 - 16916823
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||| ||||||||| ||| | |||| ||||||| ||||| |||||| |||| ||||| ||||||||||||||||    
T  16916904 caatttttatctctttgcaacagagcgaatttacctgtttttggttgcagaaaagtaagcagcgggtaggattcttcgaatc 16916823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 17121423 - 17121378
Alignment:
Q  129 tgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||    
T  17121423 tgttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 17121378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 13345261 - 13345165
Alignment:
Q  128 ctgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||||||||||  |||||| |||  ||||||||||||| ||||||||  | || ||||||||||||||  |||| ||||| || ||||| |||||||    
T  13345261 ctgttttggtttaagaaaagtaaacagcggttaggatttttcgaatcccccctatttatattgttggatattaaataacaatattgtcgcgtttatt 13345165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 18736205 - 18736129
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||| | |||||||||| || |||| ||||| |||||| || | |||||| |||||||||||||||    
T  18736205 tttatctgtttgcaatagagcaagtttacctatttttggttgcagaaaagtaggcagcggtaaggattcttcgaatc 18736129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 21987958 - 21987819
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctg--ttt 184  Q
    ||||| |||| ||||| ||||||||||| ||||| |||| ||| ||||||||| | |||| |||| |||||| ||||||||| ||||   | |||  | |    
T  21987958 aggttgcaatttttatatgtttgcaacagagcaactttacctgtttttggttgcataaaagtaagcagcggtaaggattctttgaataccctctgtatat 21987859  T
Q  185 atattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||||||||||   |||||| ||||||||||| |||||||    
T  21987858 atattgttggataataagtagcagtaatgtcgcgtttatt 21987819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 22664349 - 22664428
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| |||||| |||| ||||||||  | ||||||||||| |||||| |||||||||||||||| |||| |||||    
T  22664349 caatttttatttgtttgtaacagagcaagttaca-tgttttggttgcagaaaagtaagtagcggttaggactctttgaatc 22664428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 28008281 - 28008375
Alignment:
Q  129 tgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||||| |||||| |||| |||||||||||||||| |||||  | || ||||| |||||| |  |||| ||||||| |||||| |||||||    
T  28008281 tgttttggttgcagaaaagtaagcagcggttaggattctttgaatctcccctatttat-ttgttgtatattaaataacagtcatgtcgcgtttatt 28008375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 31236023 - 31235885
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||||||||| || || |||| ||||||| ||||||||| ||||||||||  |||||| ||||| | |||| |||| | |||||| ||||||| ||||      
T  31236023 aagggttagagag-ttgcaatttttatctctttgcaacagagcaagtttacttgtttttggttgcataaaagtaagcaacggttaagattctttgaattc 31235925  T
Q  176 acgctgtttatattgttggacgttaagtaacagtaatgtc 215  Q
     | || ||||||||||||||  |||| ||||||| |||||    
T  31235924 cctctatttatattgttggatattaaataacagtcatgtc 31235885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 22620409 - 22620478
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaa-ataagtagcggttaggattctt 168  Q
    ||||||||||||||||||| | || ||| |||||||||||||||||||  |||| |||||||| |||||||    
T  22620409 tttatctgtttgcaacaaatcgag-ttacctgttttggttgtagaaaatgtaagcagcggttaagattctt 22620478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 24214717 - 24214759
Alignment:
Q  132 tttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||| ||||||||||||||||||||||| |||| |||||    
T  24214717 tttggttgcagaaaaataagtagcggttaggactctttgaatc 24214759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 25404036 - 25403974
Alignment:
Q  107 tttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattctt 168  Q
    ||||||||| ||||| |||| ||||||| ||||  |||||| |||||||||||||||||||||    
T  25404036 tttgcaacagagcaactttacctgtttttggttccagaaaagtaagtagcggttaggattctt 25403974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 16360013 - 16360064
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaa 146  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||| ||||||    
T  16360013 caatttttatttgtttgcaacaaagcaag-ttacctgttttggttgcagaaaa 16360064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 23179926 - 23180006
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||| ||| | | ||| |||| || ||||||||| |||||| |||| |||||| |||||| ||||||||    
T  23179926 caatttttatctgtttacaaaataacaattttaccttttttggttggagaaaagtaagcagcggtaaggattattcgaatc 23180006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 24054108 - 24054188
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | ||||  |||||||||||| |||||  |||   | ||||||||||||||||||    
T  24054108 caatttttatctgtttgcaacagagcgaatttacttgttttggttgttgaaaagaaagcgacagttaggattcttcgaatc 24054188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 32382965 - 32382886
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| |||||  ||| |||||||||||| |||||  | || ||| |||||||||||| |||||    
T  32382965 caatttttatctgtttgcaacagagcaa-attacctgttttggttgcagaaatgttagcagccgttaggattctttgaatc 32382886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 17438479 - 17438258
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatcttta 102  Q
    |||||||| | ||| | |||||||||||||||  | ||  ||||||||||||||||| ||||||| || | ||||||| |||||||| || |||| ||||    
T  17438479 tatccacatggattgtcgtttcgtccaaacaattcacgttacttatttttgtaagtttgacgatataataaataaaggtttagaaagcttgcaattttta 17438380  T
Q  103 tctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaag 202  Q
    ||||||||||||| ||||| |||| |||||||||||| |||||| |||| | ||||||||||||||||||||  | || ||||||||||| ||  ||||     
T  17438379 tctgtttgcaacagagcaattttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatcccctctatttatattgttcgatattaaa 17438280  T
Q  203 taacagtaatgtcgtgtttatt 224  Q
    |||| || |||||| |||||||    
T  17438279 taacggtcatgtcgcgtttatt 17438258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 4650328 - 4650447
Alignment:
Q  55 taagttgacgataaaaaagataaagggttagaaagg-ttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagta 153  Q
    ||||||||||||| ||||| ||| |||||| ||||  || |||| ||||||||||||||||  |||||||||| |||||||||||| |||||| |||| |    
T  4650328 taagttgacgatacaaaagttaa-gggttaaaaagacttgcaatttttatctgtttgcaacggagcaagtttacctgttttggttgcagaaaagtaagca 4650426  T
Q  154 gcggttaggattcttcgaatc 174  Q
     ||||||||||||||||||||    
T  4650427 acggttaggattcttcgaatc 4650447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 932833 - 932963
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    |||||||||| |||||| |||| || ||||| |||||| ||| ||   ||||||| ||||| ||||||||||| ||||||||||  ||||||||||| ||    
T  932833 acttatttttataagtttgacgttataaaagttaaaggtttaaaagacttacaatttttatttgtttgcaacagagcaagtttacttgttttggttgcag 932932  T
Q  143 aaaaataagtagcggttaggattcttcgaat 173  Q
    |||| |||| ||||||||| |||||||||||    
T  932933 aaaagtaagcagcggttagtattcttcgaat 932963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 8770143 - 8770229
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||| ||||||||||| |||||||||| |||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  8770143 aggttgcaatttttatatgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagcagttaggattcttcgaatc 8770229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 2167574 - 2167455
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttg 193  Q
    |||| ||||||||||||||||| | |||||| | ||||||||||||| ||||| |||| || |||||||||||||||||||  | || ||||||||||||    
T  2167574 caatttttatctgtttgcaacataccaagtt-acctgttttggttgtggaaaagtaagaagtggttaggattcttcgaatc-cccctatttatattgttg 2167477  T
Q  194 gacgttaagtaacagtaatgtc 215  Q
    ||  |||| |||||||||||||    
T  2167476 gatattaaataacagtaatgtc 2167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 12411301 - 12411411
Alignment:
Q  105 tgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagta 204  Q
    ||||||||||| | |||||||| |||||| ||||| |||| | |||||  ||||||||||||||||||||  | |||||||||||||||||  |||||||    
T  12411301 tgtttgcaacacaacaagtttacctgttt-ggttgcagaacagtaagtgacggttaggattcttcgaatcccccctgtttatattgttggatattaagta 12411399  T
Q  205 acagtaatgtcg 216  Q
    | ||||||||||    
T  12411400 atagtaatgtcg 12411411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 8765241 - 8765327
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||| ||||||||||| |||||||||| |||||||||||| |||||| |||| ||| |||| |||||||||||||    
T  8765241 aggttgcaatttttatatgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagcagttaagattcttcgaatc 8765327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 21303311 - 21303183
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttg 193  Q
    |||| ||||||||||||||||| |||||||| |  ||||||||||| |||||| |||| ||||||||||||| || |||||  | || ||||| ||||||    
T  21303311 caatttttatctgtttgcaacagagcaagtt-acttgttttggttgcagaaaagtaagcagcggttaggattatttgaatcccccctatttat-ttgttg 21303214  T
Q  194 gacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||  |||| || |||||||||||||||||||    
T  21303213 gatattaaatagcagtaatgtcgtgtttatt 21303183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 41508516 - 41508628
Alignment:
Q  101 tatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtta 200  Q
    |||||||||||||||||||||| |||  ||||||||||| |||||| |||  |||||||| ||||||| |||||  | || ||||||||||||||  |||    
T  41508516 tatctgtttgcaacaaagcaag-ttacatgttttggttgcagaaaagtaaccagcggttaagattctttgaatc-cccctctttatattgttggatatta 41508613  T
Q  201 agtaacagtaatgtc 215  Q
    | |||||||||||||    
T  41508614 aataacagtaatgtc 41508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 12754881 - 12754800
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||||| ||| |||||| ||| ||||||||| |||||| |||| ||||||||||||||||||||||    
T  12754881 caatttttatttgtttgcaacagagctagtttacctggttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 12754800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 20023510 - 20023430
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | |||| | |||||||||| |||||| |||||||| |||||||||||| |||||    
T  20023510 caatttttatctgtttgcaacagagcgaatttaccagttttggttgcagaaaagtaagtagcagttaggattctttgaatc 20023430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 21302065 - 21302141
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttgg-ttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| |||||||||| || |||| | ||| ||||||||||  ||||||||||||||||||||||    
T  21302065 tttatctgtttgcaacagagcaagtttacctttttttgattgcagaaaaataaacagcggttaggattcttcgaatc 21302141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 19925575 - 19925504
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttgg-ttgtagaaaaataagtagcggttaggattcttc 169  Q
    ||||| ||||||||||| |||||||||| ||||||||| ||| |||||| |||| |||||||||||||||||    
T  19925575 tttatatgtttgcaacagagcaagtttacctgttttggtttgcagaaaagtaagcagcggttaggattcttc 19925504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 16229912 - 16229830
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatca 175  Q
    |||| ||||||||||||||||| ||| | |||| ||||||| ||||| | |||| |||| |||||||||||||||||||||||    
T  16229912 caatttttatctgtttgcaacagagcgaatttacctgtttttggttgcaaaaaagtaagcagcggttaggattcttcgaatca 16229830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 19908461 - 19908579
Alignment:
Q  107 tttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaa 205  Q
    |||||||||||||||||||| || |||| ||||| |||||| |||| ||| ||||||||||||||||||     |||||||| |||| ||  || | |||    
T  19908461 tttgcaacaaagcaagtttacctatttttggttgcagaaaagtaagcagcagttaggattcttcgaatcccatatgtttatactgtttgatattgaataa 19908560  T
Q  206 cagtaatgtcgtgtttatt 224  Q
    ||||||||||| |||||||    
T  19908561 cagtaatgtcgcgtttatt 19908579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 27413859 - 27413778
Alignment:
Q  90 gttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcg 170  Q
    |||||||| ||||||||||| ||||| ||| | |||| ||||||| ||||| |||||| |||| ||||||||||||||||||    
T  27413859 gttacaatttttatctgttttcaacagagcgattttacctgtttttggttgcagaaaagtaagcagcggttaggattcttcg 27413778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 8170017 - 8170093
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| ||| | |||| ||||||| ||||| |||||| || | ||||||||||||||||||||||    
T  8170017 tttatctgtttgcaacatagcgaatttacctgtttttggttgcagaaaagtatgcagcggttaggattcttcgaatc 8170093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 18736624 - 18736556
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattctt 168  Q
    ||||| ||||||||||  | |||||| | |||||||||||| ||||||||||| ||||||||||||||||    
T  18736624 tttatttgtttgcaaccgaacaagtt-acctgttttggttgcagaaaaataagcagcggttaggattctt 18736556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 12805847 - 12805768
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| || || || | ||| |||||||| |||||| |||| || |||||||||||||||||||    
T  12805847 caatttttatctgtttgcaacagagaaaatt-acctgatttggttgcagaaaagtaagcaggggttaggattcttcgaatc 12805768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 21325483 - 21325558
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcg 170  Q
    |||| ||||||| ||||||||| |||||||| | ||  |||||||| |||||| ||||||||||||| |||||||||    
T  21325483 caatttttatctatttgcaacagagcaagtt-acctaatttggttgcagaaaagtaagtagcggttatgattcttcg 21325558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 7478275 - 7478182
Alignment:
Q  131 ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||| ||||||||||  |||| || | |||||||| ||||||||  | || ||||||||||||||  |||| ||||||| |||||| |||||||    
T  7478275 ttttagttgtagaaatgtaagcagggattaggattattcgaatcccctctatttatattgttggatattaaataacagttatgtcgcgtttatt 7478182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 8883081 - 8883000
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaact-gttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| |||||| ||  |||| |||| |||||| ||||  || ||||||||||||||||||    
T  8883081 caatttttatctgtttgcaacatagcgagtttacctatttttagttgcagaaaattaagctgcagttaggattcttcgaatc 8883000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 20429836 - 20429904
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaa 146  Q
    ||||||||||| | || |||| ||||| ||||||||||| |||||||||| || ||||||||| ||||||    
T  20429836 aagggttagaa-gtttgcaatttttatatgtttgcaacagagcaagtttatctattttggttgcagaaaa 20429904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 7495035 - 7494971
Alignment:
Q  131 ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    |||||||||||||||| |||| || | |||||||| ||||||||  | || ||||||||||||||    
T  7495035 ttttggttgtagaaaagtaagcagggattaggattattcgaatcccctctatttatattgttgga 7494971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 1848257 - 1848056
Alignment:
Q  22 tttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagca 120  Q
    ||||||||||||||   |||  ||||||||||||||||| ||||||| |||| || |||||||||| || || |||| |||||||||||| |||| ||||    
T  1848257 tttcgtccaaacaatttgcgttacttatttttgtaagtttgacgatataaaa-attaagggttagagagcttgcaatttttatctgtttgaaacagagca 1848159  T
Q  121 agtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtt 220  Q
    |||||| |||||||||||| |||||| |||| |||||||| |||||||||||||  | || | ||||||||||||  ||||  |||||||||||||||||    
T  1848158 agtttacctgttttggttgcagaaaagtaagcagcggttatgattcttcgaatc-tccctatatatattgttggatattaaaaaacagtaatgtcgtgtt 1848060  T
Q  221 tatt 224  Q
    ||||    
T  1848059 tatt 1848056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 39273183 - 39273003
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgta 141  Q
    ||||||||||||||||| ||||||| ||||| ||| |||||| |||| || |||  || |||| ||||||||| |||||||||| || |||| ||||| |    
T  39273183 acttatttttgtaagtttgacgatataaaagttaa-gggttataaag-ttgcaaatttaatctatttgcaacagagcaagtttacctatttttggttgca 39273086  T
Q  142 gaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||||| |||| |||||||||||| |||||||||  | |||||||||||||||||  |||| ||| |||||||||| |||||||    
T  39273085 gaaaagtaagcagcggttaggatccttcgaatctcctctgtttatattgttggatattaaataaaagtaatgtcgcgtttatt 39273003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 20582347 - 20582477
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaaggtta-caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    ||||| |||| ||||||||||||| ||||| ||| |||||| |||| ||  |||| ||||||| ||||||||| |||||||||| |||||||||||| ||    
T  20582347 acttaattttataagttgacgatataaaaggtaa-gggttaaaaagatttgcaatttttatctatttgcaacagagcaagtttacctgttttggttgcag 20582445  T
Q  143 aaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| |||| ||| ||||||||||||||||||    
T  20582446 aaaagtaagcagcagttaggattcttcgaatc 20582477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 8979054 - 8978833
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaa-gggttagaaaggttacaatcttt 101  Q
    |||||||| | ||| | |||||||||||||||  |||   ||||||||| ||||||| ||| ||| |||||||||| ||||||| |   || |||| ||     
T  8979054 tatccacatggattgttgtttcgtccaaacaattcgcattacttattttggtaagtttgacaatataaaagataaaagggttaggat--ttgcaattttc 8978957  T
Q  102 atctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtta 200  Q
    |||||||||||| | | |||||||| ||||||| ||||| ||||||||||| ||| ||||||||||||  ||||  | |||||||||||||||||  |||    
T  8978956 atctgtttgcaatagaacaagtttacctgtttttggttgcagaaaaataagcagcagttaggattctttaaatcccctctgtttatattgttggatatta 8978857  T
Q  201 agtaacagtaatgtcgtgtttatt 224  Q
    | |||||||||| ||| |||||||    
T  8978856 aataacagtaatatcgcgtttatt 8978833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 18368988 - 18368836
Alignment:
Q  44 acttatttttgtaagttgacga-taaaaaagataaagggttagaaaggt-tacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgt 140  Q
    |||||||||| ||||||||| | || |||||||||||||||||||||   | |||| |||||||||||||||||||||||| ||| ||| ||||||||||    
T  18368988 acttatttttataagttgacaaatataaaagataaagggttagaaagtcgtgcaatttttatctgtttgcaacaaagcaag-ttacctgcttttggttgt 18368890  T
Q  141 agaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttgga 195  Q
    |||||| |||| | |||||||||||| | |||||  | |||| ||||||||||||    
T  18368889 agaaaagtaagaaacggttaggattccttgaatc-cccctgtctatattgttgga 18368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2563865 - 2564089
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaa---aagataaagggttagaaaggttacaat 97  Q
    ||||||||||||| ||| | |||||||||||||||   | |  |||||||| |||||||| |||||| ||   ||||||| |||||||| || | | |||    
T  2563865 tcgtatccacaaggattgtcgtttcgtccaaacaatttgtgttacttatttctgtaagttcacgatataataaaagataa-gggttagagagttga-aat 2563962  T
Q  98 ctttatctgtttgcaacaaagcaagtttaactgttttggtt-gtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggac 196  Q
     ||||||||||||||||| |||||||||| ||| ||| ||| | |||||| ||||||||||||||||| |||||||||  | ||||||||||| |||||     
T  2563963 ttttatctgtttgcaacagagcaagtttacctgctttagtttgcagaaaagtaagtagcggttaggatccttcgaatc-cccctgtttatattattggat 2564061  T
Q  197 gttaagtaacagtaatgtcgtgtttatt 224  Q
     |||| |||| || |||| | |||||||    
T  2564062 attaaataactgtcatgttgcgtttatt 2564089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 8054069 - 8053926
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtaga 143  Q
    |||||||||||||||||||||||| ||||||||| | |||| ||   ||  ||  ||||||| ||||||| | |||||||||| |||||||||||| |||    
T  8054069 acttatttttgtaagttgacgatataaaagataa-gagttaaaagacttgtaaattttatctatttgcaatatagcaagtttacctgttttggttgcaga 8053971  T
Q  144 aaaataagtagcggttaggattcttcgaatcaacgctgtttatat 188  Q
    ||| |||| ||| |||||||||||| |||||  | ||||||||||    
T  8053970 aaagtaagcagcagttaggattctttgaatcccctctgtttatat 8053926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 5108702 - 5108836
Alignment:
Q  90 gttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatat 188  Q
    |||||||| ||||||||||||||| | ||||||||||  || ||||||||| |||||| |||| |||||||||||||||| |||||  | || |||||||    
T  5108702 gttacaatttttatctgtttgcaagagagcaagtttacttgattttggttgcagaaaagtaagcagcggttaggattctttgaatc-cccctatttatat 5108800  T
Q  189 tgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||||||  |||| ||| | | ||||||||||||||    
T  5108801 tgttggatattaaataaaattcatgtcgtgtttatt 5108836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 13418657 - 13418743
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||||||||||||||| |||||||||| |||||||| ||| || ||| |||| |||||||||||||||| |||||    
T  13418657 aggttgcaatttttatctgtttgcaacagagcaagtttacctgttttgattgcagcaaagtaagcagcggttaggattctttgaatc 13418743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 6042592 - 6042712
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||| ||||||||||| || ||||||| || |||| ||||| ||||||||||| |||||||||||||||| |||||  | || |||||||||||    
T  6042592 caatttttatatgtttgcaacagag-aagtttacctttttttggttgcagaaaaataagcagcggttaggattctttgaatc--ccctatttatattgtt 6042688  T
Q  193 ggacgttaagtaacagtaatgtcg 216  Q
    |||  |||| ||||||||||||||    
T  6042689 ggatattaaataacagtaatgtcg 6042712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 7397283 - 7397362
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaat 173  Q
    |||| ||||||||||||||||||| |||||| | ||||||| ||||| |||||| |||| |||||||||||||||||||||    
T  7397283 caatttttatctgtttgcaacaaaacaagtt-atctgtttttggttgcagaaaagtaagcagcggttaggattcttcgaat 7397362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 8877512 - 8877643
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtaga 143  Q
    |||||||||| |||||||||  || ||||| ||| || | | |||  || |||| ||||||||||||||||| |||||||||| || ||||||||| | |    
T  8877512 acttatttttataagttgacagtataaaagttaagggttaaaaaaacttgcaatttttatctgtttgcaacagagcaagtttacctattttggttgcaaa 8877611  T
Q  144 aa-aataagtagcggttaggattcttcgaatc 174  Q
    || | |||| |||||||||||||||| |||||    
T  8877612 aatagtaagcagcggttaggattctttgaatc 8877643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 17829716 - 17829790
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| | |||||| |||||||||||||| |||||| |||| || ||||| |||||||||||||    
T  17829716 tttatctgtttgcaacagaacaagtt-aactgttttggttggagaaaattaagcagtggttaagattcttcgaatc 17829790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 3329631 - 3329542
Alignment:
Q  77 aagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattc 166  Q
    |||||||||| || || |||| ||||||||||||||||| ||||||||||  || ||||||||| |||||| |||| ||||||||||||||    
T  3329631 aagggttagagag-ttgcaatttttatctgtttgcaacatagcaagtttacttgtttttggttgcagaaaagtaagcagcggttaggattc 3329542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 13277627 - 13277713
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| |||| ||||||||||||| | | ||| | || | ||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  13277627 aggttgcaatttttatctgtttgctatagagcgaattgacctgttttggttgtagaaaagtaagtagcgattaggattctttgaatc 13277713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 4785987 - 4786103
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacg 197  Q
    ||||||| ||||||| | |||||||| | ||||||| ||||| |||||| |||| ||||||||||||||||||||||    || ||||||||||||||      
T  4785987 tttatctatttgcaatagagcaagtt-acctgtttttggttgcagaaaagtaagcagcggttaggattcttcgaatccctcctatttatattgttggata 4786085  T
Q  198 ttaagtaacagtaatgtc 215  Q
    |||| |||||| ||||||    
T  4786086 ttaaataacagcaatgtc 4786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 11803221 - 11803290
Alignment:
Q  105 tgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||| |||||||||| |||||||||||| ||| || |||  ||||||||||||| ||||||||    
T  11803221 tgtttgcaacagagcaagtttacctgttttggttgcagagaagtaaccagcggttaggattattcgaatc 11803290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 16365884 - 16365968
Alignment:
Q  131 ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtc 215  Q
    ||||||||| | |||| |||| ||||||||||||||||||||||  | || ||||||||||||||  |||| ||| |||||||||    
T  16365884 ttttggttgcaaaaaagtaagcagcggttaggattcttcgaatctcccctatttatattgttggatattaaataaaagtaatgtc 16365968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 18662582 - 18662661
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||||| |||||||| | |||||||||||| |||||  |||| ||||||||||| ||||||||||    
T  18662582 caatttttatttgtttgcaacagagcaagtt-acctgttttggttgcagaaatgtaagcagcggttaggactcttcgaatc 18662661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 17077252 - 17077382
Alignment:
Q  89 ggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatat 188  Q
    |||| |||| ||||||||||||||| | || ||||||| |||||||| ||| |||||| |||| ||||||||||     |||||||  | |||| |||||    
T  17077252 ggttgcaatttttatctgtttgcaatagagtaagtttacctgttttgtttgcagaaaagtaagcagcggttagg-----tcgaatcctctctgtatatat 17077346  T
Q  189 tgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||| ||   |||||||||||||||||  |||||||    
T  17077347 tgttagataataagtaacagtaatgtcacgtttatt 17077382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 6006085 - 6006157
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaa 172  Q
    ||||||||||||||||| || ||||| | |||||||||| | |||||| ||||||||||||| |||| ||||||    
T  6006085 tttatctgtttgcaacagagtaagtt-acctgttttggtggcagaaaagtaagtagcggttaagattgttcgaa 6006157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 16058991 - 16058910
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||||| ||||  |||||| ||||| || ||| |||| ||| ||||||||||||||||||    
T  16058991 caatttttatctgtttgcaacagagcaaatttacttgtttttggttgcagtaaagtaagcagctgttaggattcttcgaatc 16058910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8054540 - 8054464
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataa 77  Q
    |||||| |||| ||||| | |||||||||||||||  |  |  |||||||||||||||||||||||| |||||||||    
T  8054540 tcgtattcacaggaattgtcgtttcgtccaaacaattcttgttacttatttttgtaagttgacgatataaaagataa 8054464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 17153106 - 17153031
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| |||||| |||| |||||||| || |||| |||||    
T  17153106 tttatctgtttgcaacaaagcaag-ttacctgtttttggttgcagaaaagtaagcagcggttatgactctttgaatc 17153031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 140263 - 140337
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| |||||| ||| ||||||| |||| |||||  | ||||||||| ||||||||| |||||    
T  140263 tttatctgtttgcaacagagcaag-ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatc 140337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 3734743 - 3734817
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| |||||| ||| |||||||||||| |||||| |||| |  |||||||| |||| |||||    
T  3734743 tttatctgtttgcaacagagcaag-ttacctgttttggttgcagaaaagtaagcaatggttaggactctttgaatc 3734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 13759768 - 13759725
Alignment:
Q  179 ctgtttatattgttggacgttaagtaacagtaatgtcgtgttta 222  Q
    |||||||||||||||||  ||||||||||||||||||| |||||    
T  13759768 ctgtttatattgttggatattaagtaacagtaatgtcgcgttta 13759725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 31493068 - 31493145
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaa 172  Q
    |||| ||||||||||||||||| ||  |||| |  |||||||||||||||||  |||| | ||||||||||||||||||    
T  31493068 caatttttatctgtttgcaacagagtcagtt-acttgttttggttgtagaaatgtaagcaacggttaggattcttcgaa 31493145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 9131052 - 9131132
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||| | |||||||| ||||||||| ||||| | |||| ||||  |||||||||||||||||||||    
T  9131052 caatttttatttgtttgcaatagagcaagtt-aactgtttttggttgcaaaaaagtaagctgcggttaggattcttcgaatc 9131132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 13759908 - 13759808
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaag-ttgacgataaaaaagataaagggttagaaaggttacaatcttta 102  Q
    |||||||||| ||| | ||||||||||||||   ||||  ||||||||||||||| ||||||||| ||||| | |||| |||||||| || |||| ||||    
T  13759908 tatccacaaggattgtcgtttcgtccaaacagttcgcgttacttatttttgtaagtttgacgatataaaag-ttaaggtttagaaagcttgcaattttta 13759810  T
Q  103 tc 104  Q
    ||    
T  13759809 tc 13759808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 4819018 - 4819105
Alignment:
Q  131 ttttggttgtagaaaaataagtagcg--gttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcg 216  Q
    ||||||||| |||||| |||| ||||  ||||||||||||||||||    || ||||||||||||||  |||| |||||| |||||||    
T  4819018 ttttggttgcagaaaagtaagcagcgcggttaggattcttcgaatccctcctatttatattgttggatattaaataacagcaatgtcg 4819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 69961 - 70129
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctt 100  Q
    |||||| |||||| ||| | |||||||||||||||  | ||  ||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||| ||    
T  69961 tcgtatacacaaggattgtcgtttcgtccaaacaattctcgttacttatttttgtatgttgatgatataaaagataaagg-ttagaaaggttgcaatttt 70059  T
Q  101 tatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttc 169  Q
    ||| ||||||||| | |||||||||| ||| |||||||||||||||| |||| ||| |||||||||||||    
T  70060 tatttgtttgcaatagagcaagtttacctgtttttggttgtagaaaagtaagcagcagttaggattcttc 70129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 17216868 - 17217093
Alignment:
Q  4 tatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaa---aagataaa-gggttagaaaggttacaatct 99  Q
    |||||||| | ||| | |||||||||||||||  | ||  |||||| |||||||||||| |||| ||   |||||||| ||||||||||| || |||| |    
T  17216868 tatccacatggattgtcgtttcgtccaaacaattctcgttacttatatttgtaagttgatgatataatacaagataaaagggttagaaag-ttgcaattt 17216966  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggat---tcttcgaatcaacgctgtttatattgttggac 196  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||| |||| | ||||||||||   |||||||||   | |||||||||||||||||     
T  17216967 ttatctgtttgcaacagagcaagtttacatgttttggttgtagaaaagtaagcaacggttaggatgattcttcgaattccc-ctgtttatattgttggat 17217065  T
Q  197 gttaagtaacagtaatgtcgtgtttatt 224  Q
     |||||||| |||||||| |||||||||    
T  17217066 attaagtaaaagtaatgttgtgtttatt 17217093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19492751 - 19492539
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagttgacgataaaaaagataaagggttagaaaggttacaatctt 100  Q
    ||||||||||||||||| | ||||| |||||||||  ||||  ||||||||||||| |||||| ||| ||||| ||            |||| |||| ||    
T  19492751 tcgtatccacaagaattgtcgtttcatccaaacaattcgcgttacttatttttgtaggttgacaatataaaagtta------------ggttgcaatatt 19492664  T
Q  101 tatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgtt 199  Q
    ||| ||||||||||| ||||||||||  |||||| ||||| |||||| ||||  |||||||||||||||||||||  | |||||||||||||||||  ||    
T  19492663 tatttgtttgcaacacagcaagtttacatgtttttggttgcagaaaagtaagcggcggttaggattcttcgaatcccccctgtttatattgttggatatt 19492564  T
Q  200 aagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||||||||||| |||||||    
T  19492563 aagtaacagtaatgtcgcgtttatt 19492539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13908902 - 13909126
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaagg-ttacaatc 98  Q
    ||||||||||||| ||| | |||||||||||||||  || |  |||||||||||||| || ||||||| ||||| |||||| ||||||||  || ||||     
T  13908902 tcgtatccacaaggattgtcgtttcgtccaaacaattcgtgttacttatttttgtaattttgacgatataaaag-taaagg-ttagaaagtcttgcaatt 13908999  T
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacg 197  Q
    ||||||||||||||||| |||||||||| ||||||| ||||| | |||| |||| |||||||||||||||| |||||  |  ||||||||||||||||      
T  13909000 tttatctgtttgcaacagagcaagtttacctgtttttggttgcaaaaaagtaagcagcggttaggattctttgaatcccccttgtttatattgttggata 13909099  T
Q  198 ttaagtaacagtaatgtcgtgtttatt 224  Q
    |||| |||||   ||||| ||||||||    
T  13909100 ttaaataacatatatgtcatgtttatt 13909126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 16730450 - 16730318
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaag-ttgacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||| ||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||| ||||| | |||||||||||| ||| |||| |    
T  16730450 tcgtatccaaaaggattttcgtttcgtccaaacaactcgcgttacttatttttgtaagtttgacaatataaaag-ttaagggttagaaa-gttgcaattt 16730353  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgtttt 134  Q
    |||||||||||||||| |||||||||| |||||||    
T  16730352 ttatctgtttgcaacagagcaagtttacctgtttt 16730318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15164815 - 15165030
Alignment:
Q  1 tcgtatccacaagaattttggtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatct 99  Q
    ||||||||||| | ||| |  ||||||||||||||   |||  ||||||||||||||||| ||||||| ||||| ||| |||||||| || || |||| |    
T  15164815 tcgtatccacagggattgtcatttcgtccaaacaatttgcgttacttatttttgtaagtttgacgatataaaagttaa-gggttagagag-ttgcaattt 15164912  T
Q  100 ttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaat-caacgctgtttatattgttggacgt 198  Q
    |||| ||||||||||| |||||||||| |||||||||||| |||||| ||||| | ||||||  |||||||||| |  | |||||||||||||||||  |    
T  15164913 ttatttgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaagtggaggttagttttcttcgaatccccctctgtttatattgttggatat 15165012  T
Q  199 taagtaacagtaatgtcg 216  Q
    ||| || ||||| |||||    
T  15165013 taaatagcagtactgtcg 15165030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 17709845 - 17710025
Alignment:
Q  44 acttatttttgtaagttgacgataaaaaagataaagggttagaaagg-ttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtag 142  Q
    |||||||||| ||| ||||||||| ||||||||| |||||| ||||  ||  ||| ||||| ||||||||||| |||||||||| |||||||||||| |     
T  17709845 acttatttttataatttgacgatataaaagataa-gggttaaaaagacttgaaatttttatatgtttgcaacagagcaagtttacctgttttggttgcaa 17709943  T
Q  143 aaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||| |||||||| ||||||||||||||||||  |  ||| ||||||||||||   |||||| ||| |||| || |||||||    
T  17709944 aaaagtaagtagctgttaggattcttcgaatcccctatgtatatattgttggataataagtatcagaaatgccgcgtttatt 17710025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 24639414 - 24639289
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacg 197  Q
    ||||| ||||||||||| |||||||||| ||||||| ||||| |||||| |||| || ||||||||||||| |||||  | || ||||||||||||||      
T  24639414 tttatttgtttgcaacagagcaagtttacctgttttcggttgcagaaaagtaagcagtggttaggattctttgaatcc-ctctatttatattgttggata 24639316  T
Q  198 ttaagtaacagtaatgtcgtgtttatt 224  Q
    |||| ||||||||||||||||||||||    
T  24639315 ttaaataacagtaatgtcgtgtttatt 24639289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 7582388 - 7582557
Alignment:
Q  44 acttatttttgtaagtt-gacgataaaaaagataaaggg-ttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgt 140  Q
    ||||||||| ||||||| ||||||| |||||||||| || |||| |   || |||| || |||||||||||| | | |||||||| ||||||| |||||     
T  7582388 acttattttggtaagtttgacgatataaaagataaaaggcttaggat--ttgcaattttcatctgtttgcaatagaacaagtttacctgtttttggttgc 7582485  T
Q  141 agaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttggacgttaagtaacagtaat 212  Q
    ||||||||||| || ||||||||||||| |||||  | |||||||||||||||||  |||| ||||||||||    
T  7582486 agaaaaataagcagtggttaggattctttgaatcccctctgtttatattgttggatattaaataacagtaat 7582557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 13692645 - 13692516
Alignment:
Q  88 aggttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttat 186  Q
    ||||| |||| |||||  ||||| || | |||||||||| ||||||| ||||| |||||| |||| ||  ||||||||||||||||||  | |||| |||    
T  13692645 aggttgcaatttttattagtttgtaaaagagcaagtttacctgtttttggttgcagaaaagtaagcagtagttaggattcttcgaatccgccctgtatat 13692546  T
Q  187 attgttggacgttaagtaacagtaatgtcg 216  Q
    |||||||||  |||||||| ||||||||||    
T  13692545 attgttggatattaagtaatagtaatgtcg 13692516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 25097962 - 25098043
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| |||||||||| |||||||||||| |||| ||||||| |||||| ||||| || | ||||||||||||||||||||||    
T  25097962 caatttttatctgttggcaacaaagcaaatttacctgtttttggttgttgaaaagtatgcagcggttaggattcttcgaatc 25098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 19562133 - 19562017
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||| ||||||||| |||||||||| ||||||| ||||| |||||| |||  ||||||||| ||||||||||||  | ||||| | ||||||    
T  19562133 caatttttatctctttgcaacagagcaagtttacctgtttttggttgcagaaaagtaatcagcggttagaattcttcgaatcccctctgttaaaattgtt 19562034  T
Q  193 ggacgttaagtaacagt 209  Q
    |||  |||| |||||||    
T  19562033 ggatattaaataacagt 19562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 25094695 - 25094776
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaact-gttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||||||| | |||| || ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  25094695 caatttttatctgtttgcaacaaagcgaatttacctagttttggatgtagaaaatcaagcagcggttaggattcttagaatc 25094776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 25121176 - 25121104
Alignment:
Q  101 tatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||| |||||||| | | |||||| ||| |||||| |||| ||||||||||||||||||||||    
T  25121176 tatctgtttgcaacagagcaagtt-acccgttttgattgcagaaaagtaagcagcggttaggattcttcgaatc 25121104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 17026297 - 17026221
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| || || |||| ||||||| ||||| ||| || |||| ||||||||||||||||||||||    
T  17026297 tttatctgtttgcaacagagtaaatttacctgtttttggttgcagacaagtaagcagcggttaggattcttcgaatc 17026221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 17337093 - 17336970
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||||||| ||||| |||||||||| ||| ||||||||| | |||| |||| || | ||| |||||||||||||  |  | ||||||||| |    
T  17337093 caatttttatctgtttacaacagagcaagtttacctgtttttggttgcataaaagtaagcagagattatgattcttcgaatcccccttatttatattgat 17336994  T
Q  193 ggacgttaagtaacagtaatgtcg 216  Q
    |||  |||| ||||||||||||||    
T  17336993 ggatattaaataacagtaatgtcg 17336970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 17672144 - 17672214
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggatt 165  Q
    |||| ||||||||||||||||| |||||| ||| ||| |||||||| |||||| |||| ||| |||||||||    
T  17672144 caatttttatctgtttgcaacagagcaag-ttacctggtttggttgcagaaaagtaagaagcagttaggatt 17672214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 19636477 - 19636435
Alignment:
Q  182 tttatattgttggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    ||||||||||||||  |||| ||||||||||||||||||||||    
T  19636477 tttatattgttggatattaaataacagtaatgtcgtgtttatt 19636435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 40227914 - 40227992
Alignment:
Q  91 ttacaatctttatctgtttgcaacaaagcaagtttaactgttttg-gttgtagaaaaataagtagcggttaggattctt 168  Q
    ||||||| ||||||||||||||||  || ||||||| || ||||  ||||  |||||||||| ||||||||||||||||    
T  40227914 ttacaatttttatctgtttgcaacggagtaagtttacctattttttgttgccgaaaaataagcagcggttaggattctt 40227992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 12578240 - 12578179
Alignment:
Q  75 taaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttg 139  Q
    |||||||||||| |  ||||||| ||||||||||||||||| |||||| ||| ||||||||||||    
T  12578240 taaagggttagaga--ttacaatttttatctgtttgcaacagagcaag-ttacctgttttggttg 12578179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 26115862 - 26115783
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| || ||||| | |||||||||||| | |||  | || ||||||||||||||||| ||||    
T  26115862 caatttttatctgtttgcaacagagtaagtt-acctgttttggttgcataaatgttagcagcggttaggattcttcaaatc 26115783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 854 - 681
Alignment:
Q  21 gtttcgtccaaacaacacgcgaaacttatttttgtaagtt-gacgataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagc 119  Q
    |||||||||||||||  | ||  |||||||||| |||||| ||||||| ||||||||| || |||||||| || |||| ||||||||||||||||| ||     
T  854 gtttcgtccaaacaatccacgttacttatttttataagtttgacgatataaaagataagggtttagaaagattgcaatttttatctgtttgcaacagaga 755  T
Q  120 aagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    ||||||| ||| ||||||||| |||||| |||| |||||||| ||||||||||| |  | ||||||||||||||    
T  754 aagtttacctgtttttggttgcagaaaagtaagaagcggttaagattcttcgaaccccctctgtttatattgtt 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 572 - 652
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||||| ||| | |||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  572 caatttttatctgtttgcaacagagcgaatttacctgttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 386 - 266
Alignment:
Q  55 taagttgacgataaaaaagataaagggttagaaag-gttacaatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagt 152  Q
    ||||||||||||| |||||||||||||||||||||  || |||| |||||||| |||||| | |||||| | | ||| |||||||| |||||| |||||     
T  386 taagttgacgatataaaagataaagggttagaaagtcttgcaatttttatctgcttgcaatagagcaag-taacctgtttttggttttagaaatataagc 288  T
Q  153 agcggttaggattcttcgaatc 174  Q
    ||| ||||||||||||||||||    
T  287 agccgttaggattcttcgaatc 266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 21406 - 21486
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||| ||||||||||| || ||||||| |||||||||||  |||||| ||||||||| |||||||||||||||||    
T  21406 caatttttatttgtttgcaacagaggaagtttacctgttttggtttcagaaaagtaagtagcgattaggattcttcgaatc 21486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 25116 - 25196
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||| ||| ||||||||| |||||||||| |||||||||||| |||||| |||| | ||||||||||||||| ||||    
T  25116 caatttttctctatttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcaaatc 25196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 15740 - 15868
Alignment:
Q  47 tatttttgtaagttgacgataaaaaagataaagggttagaaagg-ttacaatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaa 144  Q
    ||||||| |||||||| |||| |||||||||| ||||||||||  || |||| ||||||  ||||||||| |||||||| | ||||||| |||||  |||    
T  15740 tatttttataagttgatgatataaaagataaacggttagaaagtcttgcaatttttatcaatttgcaacagagcaagtt-acctgtttttggttgcggaa 15838  T
Q  145 aaataagtagcggttaggattcttcgaatc 174  Q
    || |||| ||||||||| ||||||||||||    
T  15839 aagtaagcagcggttagtattcttcgaatc 15868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 72139 - 72253
Alignment:
Q  82 ttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaact-gttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgct 180  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||  |  |||| |||| |||||| |||| ||  || |||||||||||||||  | ||    
T  72139 ttagaaagcttgcaatttttatctgtttgcaacagagcaagtttacgtatttttagttgcagaaaagtaagcagtagtaaggattcttcgaatcccctct 72238  T
Q  181 gtttatattgttgga 195  Q
    |||||||||||||||    
T  72239 gtttatattgttgga 72253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 39727 - 39827
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgttg 193  Q
    |||| ||||||||||||||||| |||||||| | |||||||||||| |||||| |||| |||||||| || |||| |||||  | || ||||| ||||||    
T  39727 caatttttatctgtttgcaacagagcaagtt-acctgttttggttgcagaaaagtaagcagcggttatgactctttgaatcccccctatttattttgttg 39825  T
Q  194 ga 195  Q
    ||    
T  39826 ga 39827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 35951 - 35822
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactg-ttttggttgtagaaaaataagtagcggttaggattcttcgaatcaacgctgtttatattgtt 192  Q
    |||| ||||||| |||| ||||||| ||||| | ||| ||||||||| |||||| |||| |||||||||||||||| |||||  | || |||||||||||    
T  35951 caatttttatctatttggaacaaagaaagtt-acctgattttggttgcagaaaagtaagcagcggttaggattcttagaatc-cccctatttatattgtt 35854  T
Q  193 ggacgttaagtaacagtaatgtcgtgtttatt 224  Q
    |||  |||| ||||| |||||||  |||||||    
T  35853 ggatattaaataacaataatgtcacgtttatt 35822  T

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Target: scaffold0386 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 6063 - 5982
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    |||| ||||||||||||||| | ||| | ||||  |||||| |||||||||||| |||||| |||| |||||||||||||||    
T  6063 caatttttatctgtttgcaatagagcgaatttacttgtttttggttgtagaaaagtaagtaacggtcaggattcttcgaatc 5982  T

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Target: scaffold0102 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 35652 - 35759
Alignment:
Q  65 ataaaaaagataaagggttagaaaggttacaatctttatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggat 164  Q
    |||||| || |||||||||||| |  || |||| ||||| ||| |||||||||||||||| | |||||||||||| |||||  |||| |||||||| |||    
T  35652 ataaaagagttaaagggttagagat-ttgcaatttttatttgtctgcaacaaagcaagtt-acctgttttggttgcagaaaggtaagcagcggttaagat 35749  T
Q  165 tcttcgaatc 174  Q
    ||||| ||||    
T  35750 tcttcaaatc 35759  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 76550 - 76626
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgtttt-ggttgtagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||| ||||| ||||| ||||| |||| ||||||| |||||||||||| |||| | || |||||||||||||||||    
T  76550 tttatatgtttacaacatagcaaatttacctgtttttggttgtagaaaagtaagcaccgattaggattcttcgaatc 76626  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 69221 - 69301
Alignment:
Q  94 caatctttatctgtttgcaacaaagcaagtttaactgtt-ttggttgtagaaaaataagtagcggttaggattcttcgaat 173  Q
    |||| ||||||||||||||||| || ||||||| ||||| ||   || ||||||||||| |||||||||||||||| ||||    
T  69221 caatttttatctgtttgcaacagagaaagtttacctgttcttacatgcagaaaaataagcagcggttaggattcttagaat 69301  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 89803 - 89737
Alignment:
Q  101 tatctgtttgcaacaaagcaagtttaactgttttggttgtagaaaaataagtagcggttaggattctt 168  Q
    ||||||||||||||  | |||||| | |||||||||||| ||||||||||| ||||||||||| ||||    
T  89803 tatctgtttgcaaccgaacaagtt-acctgttttggttgcagaaaaataagcagcggttaggactctt 89737  T

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Target: scaffold0093 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 43211 - 43287
Alignment:
Q  99 tttatctgtttgcaacaaagcaagtttaactgttttggttg-tagaaaaataagtagcggttaggattcttcgaatc 174  Q
    ||||||||||||||||| | | | |||| ||| |||||||| ||||||| || | ||| ||||||||||||||||||    
T  43211 tttatctgtttgcaacacaaccaatttacctgatttggttggtagaaaagtatgcagcagttaggattcttcgaatc 43287  T

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