View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_7 (Length: 652)
Name: NF10923_low_7
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Complemental strand, 41450712 - 41450076
Alignment:
| Q |
1 |
aacaagaagtaaaagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaactgcaaggccaactcgttcaagaagaagaaagggagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450712 |
aacaagaagtaaaagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaa |
41450613 |
T |
|
| Q |
101 |
aggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450612 |
aggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagct |
41450513 |
T |
|
| Q |
201 |
cttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450512 |
cttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttg |
41450413 |
T |
|
| Q |
301 |
gttttgccattggaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcactt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450412 |
gttttgccattggaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcactt |
41450313 |
T |
|
| Q |
401 |
gtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcatactaacattttttccatttcttgccca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41450312 |
gtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcacactaacattttttccatttcttgccca |
41450213 |
T |
|
| Q |
501 |
tttgcttttcagatatatgatttttgcatcttcagttggtttatccttaatatagtatgtttttatatgattcttgcccattttttcatctcttatattt |
600 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41450212 |
tttgcttttcagatatatgatttttacatcttcagttggtttatccttaataaagtatgtttttatatgattcttgcccattttttcatctcttatattt |
41450113 |
T |
|
| Q |
601 |
atctatgctgtctttcaggcttctactgaccaaagtg |
637 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41450112 |
atctatgctgtcttccaggcttctactgaccaaagtg |
41450076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 41437486 - 41436942
Alignment:
| Q |
1 |
aacaagaagtaaaagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaactgcaaggccaactcgttcaagaagaagaaagggagaa |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437486 |
aacaaaaattaaaagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaaccgcaaggccaactcgttcaagaagaagaaagggagaa |
41437387 |
T |
|
| Q |
101 |
aggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41437386 |
aggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattctctcagattctttttcaagct |
41437287 |
T |
|
| Q |
201 |
cttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41437286 |
cttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatggtg |
41437187 |
T |
|
| Q |
301 |
gttttgccattggaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcactt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41437186 |
gttttgccattggaagttctttatgcattcttgttagagcattgttactttgtacagttggttataagacagctactatactcttcaataaaatgcactt |
41437087 |
T |
|
| Q |
401 |
gtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcatactaaca-ttttttccatttcttgccc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
41437086 |
gtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcataccaacatttttttccatttcttgccc |
41436987 |
T |
|
| Q |
500 |
atttgcttttcagatatatgatttttgcatcttcagttggtttatc |
545 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
41436986 |
a-ttgcttttcagagatatgatttttgcatcttcatttggtttatc |
41436942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Complemental strand, 14239625 - 14239100
Alignment:
| Q |
13 |
aagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaactgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14239625 |
aagaggcaaacaaagatgagcaaaatggtaaatcaggtgataaaggcgaaccacaaggccaactcgttcaagaagaagaaagggaaaaaggtaaagttgg |
14239526 |
T |
|
| Q |
113 |
attttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagctcttcaaattgga |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
14239525 |
attttcagtgtattggaagtatatcacaactgcatatgggggagttcttgtaccattcatattattggctcatattcttcttcaagctcttcaaattgga |
14239426 |
T |
|
| Q |
213 |
agcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttggttttgccattg |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
14239425 |
agcaactattggatggctttggcaactcccatctcagccgatgtcaagccaccgattgaaggaacaactcttatgaaagtctatgttggtttggccattg |
14239326 |
T |
|
| Q |
313 |
gaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatactcttcaataaaatgcacttgtgcattttccg |
412 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239325 |
gaagttctctatgcattcttgttaaagggttgttacttgttacagctggttataagacagctactatactcttcaataaaatgcacttgtgcattttccg |
14239226 |
T |
|
| Q |
413 |
tgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcatactaacattttttccatttcttgcccatttgcttttcag |
512 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||| || |||||| ||||| |
|
|
| T |
14239225 |
tgccccgatgtcattttttgattctactccaagtggacgaatcctcaatagagtatgtcatactggcattttttccgtttctcgctcatttgaatttcat |
14239126 |
T |
|
| Q |
513 |
atatatgatttttgcatcttcagttg |
538 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
14239125 |
agatatgatttttgcatcttcagttg |
14239100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 14373724 - 14374093
Alignment:
| Q |
13 |
aagaggcaaacaaagatgagcaaaatggtaaagcagatgataaaggcgaactgcaaggccaactcgttcaagaagaagaaagggagaaaggtaaagttgg |
112 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| |||||| | || |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14373724 |
aagaggcaaccaaagatgtgcaaaatggtaaagcagatgataatagcgaaccgaaaaaccaacttgttcaagaagaagaaagggagaaaggtaaagttgg |
14373823 |
T |
|
| Q |
113 |
attttcagtctattggaagtatatcacaactgcatatggaggatctcttgtaccgttcatattattcgctcagattctttttcaagctcttcaaattgga |
212 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
14373824 |
gttttcggtgtattggaagtatatcacaactgcatatggaggatctgtcgtaccattcatattattggcctatattctttttcaagctcttcaaattgga |
14373923 |
T |
|
| Q |
213 |
agcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacctgttgaaggaacaactcttattgaagtctatgttggttttgccattg |
312 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||| |
|
|
| T |
14373924 |
agcaactactggatggcgtgggcaactcccatctcagcagatgtggagccacctgttgaagggacgactcttattgaagtctatgttggtttggcctttg |
14374023 |
T |
|
| Q |
313 |
gaagttctttatgcattcttgttagagcattgttacttgttacagttggttataagacagctactatact |
382 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14374024 |
caagttctatatgcattcttgttagatctatgttacttgttacagttggttgtaagacagctactatact |
14374093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 14374918 - 14375015
Alignment:
| Q |
377 |
tatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcata |
474 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || ||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14374918 |
tatactcttcaaaaaaatgcacttgtgtatctttcgcgcccccatgtcatttttcgattctactccaagtggacggatccttaatagagtatgtcata |
14375015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 637
Target Start/End: Complemental strand, 41436919 - 41436864
Alignment:
| Q |
581 |
ttttttcatctcttatatttatctatgctgtctttcaggcttctactgaccaaagtg |
637 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
41436919 |
ttttttcatctctt-tattcatctatgctgtcttccaggcttctactgatcaaagtg |
41436864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 67 - 470
Target Start/End: Complemental strand, 22749575 - 22749172
Alignment:
| Q |
67 |
aaggccaactcgttcaagaagaagaaagggagaaaggtaaagttggattttcagtctattggaagtatatcacaactgcatatggaggatctcttgtacc |
166 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||| ||||||||||||| ||||| || || ||||| ||||| || || ||||||||||| ||||||| || |
|
|
| T |
22749575 |
aaggacaacttgttcaagaagaagaaagagagcaaggtaaagttgggttttcggtgtactggaaatatataacgacggcatatggaggtgctcttgtgcc |
22749476 |
T |
|
| Q |
167 |
gttcatattattcgctcagattctttttcaagctcttcaaattggaagcaactattggatggcttgggcaactcccatctcagccgaagtcgagccacct |
266 |
Q |
| |
|
| || |||| | ||| | || | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |
|
|
| T |
22749475 |
gctcgtattgatagctgaaatcatgtttcaacttcttcaaattggaagcaactattggatggcttcttcaactcccatctcaaaagatatggagccacct |
22749376 |
T |
|
| Q |
267 |
gttgaaggaacaactcttattgaagtctatgttggttttgccattggaagttctttatgcattcttgttagagcattgttacttgttacagttggttata |
366 |
Q |
| |
|
|||| |||||| || || | | |||||||| |||| ||||| |||||||||||||| | || ||||||| | |||| || | |||||||| |
|
|
| T |
22749375 |
gttggaggaactacactcctagttgtctatgtatgtttggccataggaagttctttatgtgtcctatctagagcaacacttgttgtcaccgctggttata |
22749276 |
T |
|
| Q |
367 |
agacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagt |
466 |
Q |
| |
|
| ||||||||| |||||||||| |||||||| | |||||||| || || || ||||| ||||||||| | ||||||||||| ||||||||||||| || |
|
|
| T |
22749275 |
aaacagctactctactcttcaacaaaatgcatctctgcatttttcgcgctccaatgtctttttttgatgccactccaagtggaagaatccttaatagggt |
22749176 |
T |
|
| Q |
467 |
atgt |
470 |
Q |
| |
|
|||| |
|
|
| T |
22749175 |
atgt |
22749172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 472
Target Start/End: Original strand, 22741911 - 22741966
Alignment:
| Q |
417 |
ccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtca |
472 |
Q |
| |
|
|||||||||||||||||| | || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
22741911 |
ccgatgtcgttttttgatgcgacaccaagtggacgaattcttaatagagtatgtca |
22741966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 32119505 - 32119393
Alignment:
| Q |
362 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaat |
461 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| | ||| || || ||||| | | ||||| |||||||||||||||| | ||| ||||| |
|
|
| T |
32119505 |
ttataagacagctcctatactcttcaagaaaatgcacttttacatctttcgcgcccccgtataatttttcaattctactccaagtggacagatctttaat |
32119406 |
T |
|
| Q |
462 |
agagtatgtcata |
474 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32119405 |
agagtatgtcata |
32119393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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