View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_70 (Length: 237)
Name: NF10923_low_70
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 40195491 - 40195303
Alignment:
| Q |
34 |
aaaaatggtaccgctatcaccgattaggagaagtttaatgagataatcgtaatcagcacgagctctggcaggtggagcagccatcgaaacaaccaaaacc |
133 |
Q |
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| T |
40195491 |
aaaaatggtaccgctatcaccgattaggagaagtttaatgagataatcgtaatcagcacgagctctggcaggtggagcagccatcgaaacaaccaaaacc |
40195392 |
T |
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| Q |
134 |
tattcctctgcgagtgtcgatcattaattaattacaatcacaacaatgaaataatttatgaaaaatgaaaaacatatctaataataataat |
224 |
Q |
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| T |
40195391 |
tattcctctgcgagtgtcgatcattaattaattacaatcacaacaatgaaataatttatgaaaaatgaaaaac--atctaataataataat |
40195303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 29351828 - 29351904
Alignment:
| Q |
43 |
accgctatcaccgattaggagaagtttaatgagataatcgtaatcagcacgagctctggcaggtggagcagccatcg |
119 |
Q |
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| T |
29351828 |
accgctatcaccgatgaggagaagcttgatgagataatcgtaatcggatcgagctcttgcaggtggagcagccatcg |
29351904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 29344097 - 29344173
Alignment:
| Q |
43 |
accgctatcaccgattaggagaagtttaatgagataatcgtaatcagcacgagctctggcaggtggagcagccatcg |
119 |
Q |
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| T |
29344097 |
accgctatcaccgatgaggagaagcttgattaggtaatcgtaatcggatcgagctcttgcaggtggagcagccatcg |
29344173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 23386688 - 23386769
Alignment:
| Q |
42 |
taccgctatcaccgattaggagaagtttaatgagataatcgtaatcagcacgagctctggcaggtggagcagccatcgaaac |
123 |
Q |
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|||||||||| ||||| | |||||| |||||||| ||||||||||| |||||||| || || ||||||||||||||| |||| |
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| T |
23386688 |
taccgctatcgccgatcaagagaagcttaatgaggtaatcgtaatcggcacgagcccttgccggtggagcagccatcaaaac |
23386769 |
T |
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