View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_78 (Length: 214)
Name: NF10923_low_78
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 10751219 - 10751031
Alignment:
| Q |
16 |
caaccctttccgcttcgttacgaatttcgtcgatcaaaaccaagcactcaaaaacctttccatagtccttcaaaggccaatgatcatgccataagaaagg |
115 |
Q |
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| T |
10751219 |
caaccctttccgcttcgttacgaatttcatcgatcaaaagcaagcactcaaaaacctttccatagtttttcaaaggccaatgatcatgccataagaaagg |
10751120 |
T |
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| Q |
116 |
gtttttccctataatttcaattacctcgtaatcatcataagagcctttactatactccttcaattgtgataaatctctctccaacgtcc |
204 |
Q |
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| T |
10751119 |
gtttttccctataatttcaattacctcgtaatcatcataagagcctttactatactccttcaattgtgataaatctctctccaatgtcc |
10751031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 32560757 - 32560690
Alignment:
| Q |
57 |
aagcactcaaaaacctttccatagtccttcaaaggccaatgatcatgccataagaaagggtttttccc |
124 |
Q |
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|||||||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
32560757 |
aagcactcaaaaacctttgcatagtccttaacaggccaatgatcatgccacaagaaagggtttttccc |
32560690 |
T |
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