View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_low_79 (Length: 205)

Name: NF10923_low_79
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_low_79
NF10923_low_79
[»] chr8 (12 HSPs)
chr8 (41-187)||(34522152-34522298)
chr8 (125-187)||(926399-926461)
chr8 (108-168)||(14905090-14905150)
chr8 (101-172)||(37153001-37153072)
chr8 (109-186)||(16163375-16163452)
chr8 (111-187)||(33714331-33714408)
chr8 (144-187)||(26215427-26215470)
chr8 (109-155)||(8499087-8499133)
chr8 (106-155)||(2840236-2840285)
chr8 (106-155)||(2844923-2844972)
chr8 (102-155)||(4389817-4389870)
chr8 (111-187)||(13459543-13459620)
[»] chr1 (14 HSPs)
chr1 (109-187)||(33527243-33527321)
chr1 (110-187)||(3924521-3924598)
chr1 (104-179)||(4078251-4078326)
chr1 (117-187)||(2831644-2831714)
chr1 (109-187)||(34404932-34405010)
chr1 (109-187)||(34619474-34619552)
chr1 (109-187)||(35017470-35017548)
chr1 (103-155)||(48064183-48064235)
chr1 (112-187)||(10199504-10199579)
chr1 (109-168)||(10280522-10280581)
chr1 (109-155)||(35058900-35058946)
chr1 (110-187)||(48748422-48748499)
chr1 (144-188)||(23544735-23544779)
chr1 (107-187)||(52059781-52059861)
[»] chr7 (12 HSPs)
chr7 (103-187)||(12110250-12110334)
chr7 (109-187)||(41668206-41668284)
chr7 (109-187)||(41668884-41668962)
chr7 (103-155)||(425965-426017)
chr7 (109-168)||(31002933-31002992)
chr7 (125-185)||(44917634-44917694)
chr7 (109-185)||(45530417-45530493)
chr7 (122-172)||(7644393-7644443)
chr7 (109-155)||(48131229-48131275)
chr7 (150-187)||(46945846-46945883)
chr7 (103-183)||(6824809-6824888)
chr7 (103-155)||(46945769-46945821)
[»] chr6 (4 HSPs)
chr6 (99-185)||(33080680-33080766)
chr6 (104-186)||(17241347-17241429)
chr6 (141-188)||(3171526-3171573)
chr6 (103-155)||(31686588-31686640)
[»] chr4 (12 HSPs)
chr4 (117-187)||(53422266-53422336)
chr4 (143-190)||(21469976-21470023)
chr4 (109-187)||(6466142-6466220)
chr4 (100-187)||(39178346-39178434)
chr4 (148-184)||(38478677-38478713)
chr4 (107-186)||(1965832-1965913)
chr4 (109-171)||(4212813-4212874)
chr4 (109-178)||(11877719-11877789)
chr4 (144-186)||(55084571-55084613)
chr4 (98-147)||(17223286-17223335)
chr4 (106-155)||(39886717-39886766)
chr4 (144-188)||(50742929-50742973)
[»] chr5 (9 HSPs)
chr5 (101-186)||(9106713-9106798)
chr5 (107-184)||(10125818-10125895)
chr5 (109-187)||(18857496-18857574)
chr5 (112-187)||(11054085-11054160)
chr5 (104-154)||(26796338-26796388)
chr5 (104-154)||(26799856-26799906)
chr5 (104-154)||(26807406-26807456)
chr5 (122-187)||(5390163-5390228)
chr5 (104-157)||(38105005-38105058)
[»] chr3 (13 HSPs)
chr3 (122-187)||(50760523-50760588)
chr3 (141-187)||(139913-139959)
chr3 (124-187)||(44295443-44295506)
chr3 (109-186)||(44014176-44014253)
chr3 (131-187)||(2128347-2128403)
chr3 (109-188)||(36587872-36587952)
chr3 (144-187)||(34958259-34958302)
chr3 (104-154)||(9995850-9995900)
chr3 (104-154)||(10131536-10131586)
chr3 (104-154)||(10216867-10216917)
chr3 (104-154)||(10220386-10220436)
chr3 (104-154)||(48387450-48387500)
chr3 (103-172)||(42747888-42747956)
[»] chr2 (9 HSPs)
chr2 (110-187)||(4090246-4090323)
chr2 (114-181)||(41817069-41817136)
chr2 (109-187)||(28039428-28039506)
chr2 (100-161)||(1977139-1977200)
chr2 (125-184)||(6887362-6887419)
chr2 (101-145)||(44644219-44644263)
chr2 (144-187)||(33931666-33931709)
chr2 (109-184)||(38767624-38767698)
chr2 (144-188)||(7928389-7928433)
[»] scaffold0022 (1 HSPs)
scaffold0022 (144-187)||(143157-143200)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 34522298 - 34522152
Alignment:
Q  41 aactctgacaactaaattgatggtttatccaatttatgtgtgaagcaggatttgcaggcataaggccatgtttggataaaaaacttattttgcaacttac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34522298 aactctgacaactaaattgatggtttatccaatttatgtgtgaagcaggatttgcaggcataaggccatgtttggataaaaaacttattttgcaacttac 34522199  T
Q  141 agcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34522198 agcataagcgcttatgaataagctatttctatgacacaagataaaat 34522152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 926399 - 926461
Alignment:
Q  125 ttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||| || | ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  926399 ttattttgcagctaatagcataagcgcatatgaataagctatttctataacacaagataaaat 926461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 14905090 - 14905150
Alignment:
Q  108 atgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctattt 168  Q
    |||||||||||| || |||| |||||| ||||||| ||||| |||||||||||||||||||    
T  14905090 atgtttggataataagcttaatttgcagcttacagtataagagcttatgaataagctattt 14905150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 37153072 - 37153001
Alignment:
Q  101 taaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctat 172  Q
    ||||| ||||||||||| || |||||| ||||||||||| || ||||||||||||| ||||  |||||||||    
T  37153072 taaggtcatgtttggattaacaacttaatttgcaacttataggataagcgcttatgtataatatatttctat 37153001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 16163452 - 16163375
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    ||||||||||||  |||||||||||| | || ||||||| | |||||| ||||||||||||||| ||  |||||||||    
T  16163452 tgtttggataaatgacttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataaaa 16163375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 33714408 - 33714331
Alignment:
Q  111 tttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagcta-tttctatgacacaagataaaat 187  Q
    |||||||||| ||||||||||||| ||||||  | |||| |||||||||||  || ||||||| ||||||||||||||    
T  33714408 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaat 33714331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 26215427 - 26215470
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||    
T  26215427 ataagcgcttatgtataagctatttctataacaaaagataaaat 26215470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 8499087 - 8499133
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    |||||||||||| |||||| ||||||||||| || ||||||||||||    
T  8499087 tgtttggataaacaacttaatttgcaacttatagtataagcgcttat 8499133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 2840236 - 2840285
Alignment:
Q  106 ccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||||||| ||||| ||||||||||||| |||| |||||||| ||||||    
T  2840236 ccatgtttgtataaacaacttattttgcagcttatagcataagtgcttat 2840285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 2844923 - 2844972
Alignment:
Q  106 ccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||||||| ||||| ||||||||||||| |||| |||||||| ||||||    
T  2844923 ccatgtttgtataaacaacttattttgcagcttatagcataagtgcttat 2844972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 4389817 - 4389870
Alignment:
Q  102 aaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    |||||| |||||||||||| ||||||||||||| |||| |||| ||| ||||||    
T  4389817 aaggccctgtttggataaataacttattttgcagcttatagcagaagtgcttat 4389870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 13459543 - 13459620
Alignment:
Q  111 tttggataaaaaacttatttt-gcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||  ||||||||| ||| | || |||||||||  ||||| ||||||||||||||||| | ||||||||||    
T  13459543 tttggataaaggacttatttttgcagcgtatagcataagcaattatgtataagctatttctatgataaaagataaaat 13459620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 33527321 - 33527243
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||  ||| ||||||||||    
T  33527321 tgtttggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataaaat 33527243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 3924521 - 3924598
Alignment:
Q  110 gtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||| |  |||||||||||| || ||||||| | || ||||| ||||||||||||| ||||||||||||||    
T  3924521 gtttggataaacagtttattttgcaacatatagcataaacactaatgaaaaagctatttctataacacaagataaaat 3924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 4078326 - 4078251
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaa 179  Q
    |||| |||||||||||| ||||||||||| |  ||||||||||| | |||||||||||| || |||| ||||||||    
T  4078326 ggccctgtttggataaacaacttattttgaagtttacagcataatctcttatgaataagttacttctgtgacacaa 4078251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 2831644 - 2831714
Alignment:
Q  117 taaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||| ||||| ||||||  |||| ||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  2831644 taaacaacttgttttgctgcttatagcataagcgcttgtgaataagctatttcaataacacaagctaaaat 2831714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 34404932 - 34405010
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| |||||| |||| | |||| | | ||||| |||||||||||||| ||||| | ||||||||||||||    
T  34404932 tgtttggataaacaacttaatttgaagcttataacgtaagcacttatgaataagctgtttcttttacacaagataaaat 34405010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 34619552 - 34619474
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| | |||| |||||| |||| |||||||  ||||||| |||||| |||||||| ||| ||||||||||    
T  34619552 tgtttggataaacagcttaatttgcagcttatagcataattgcttatgtataagccatttctataacaaaagataaaat 34619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 35017470 - 35017548
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||| ||||||| ||||||||||||   || |||||||||  |||||||||||||||||| ||| | ||||||||||||    
T  35017470 tgttcggataaacaacttattttgcggttttcagcataagaacttatgaataagctatttttataatacaagataaaat 35017548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 48064183 - 48064235
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    |||||||||||||||||| |||||| |||||| |||| ||||||||| |||||    
T  48064183 aggccatgtttggataaacaacttaatttgcagcttatagcataagcccttat 48064235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 10199579 - 10199504
Alignment:
Q  112 ttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||| |||| ||||||||||||| |||| ||||||| | |||||  ||||| ||||||||| || |||||||||||    
T  10199579 ttgggtaaacaacttattttgcagcttatagcataaacacttatagataagttatttctataacccaagataaaat 10199504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 10280522 - 10280581
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctattt 168  Q
    |||||||||||| |||||| ||| || |||| ||||||||||||||||| | ||||||||    
T  10280522 tgtttggataaacaacttagtttacagcttatagcataagcgcttatgactgagctattt 10280581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 35058946 - 35058900
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    |||||||||||| | |||||||||||||||| ||||||||| |||||    
T  35058946 tgtttggataaacagcttattttgcaacttatagcataagcacttat 35058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 48748499 - 48748422
Alignment:
Q  110 gtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||| ||| ||||||    |||||| | |||| |||||||||| |||||||| ||| ||||||||||||||    
T  48748499 gtttggataaacaacgtattttcttgcttacaacgtaagtgcttatgaatgagctatttatataacacaagataaaat 48748422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 23544779 - 23544735
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaatt 188  Q
    ||||||||||||| ||||||||||||||||  | |||||||||||    
T  23544779 ataagcgcttatgtataagctatttctatggaaaaagataaaatt 23544735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 52059781 - 52059861
Alignment:
Q  107 catgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||||||  || || |||| | |||| ||||||||| |||| || ||||||||| |||| ||||||| ||||||    
T  52059781 catgtttggataaattacataatttgaagcttatagcataagctcttacgagtaagctattactataacacaagttaaaat 52059861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 12110250 - 12110334
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||| ||||| |||||| | |||| ||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  12110250 aggccctgtttcgataaacagcttaatttgcaacttatagcataagcacttatgaataacctatttctattacacaagataaaat 12110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 41668284 - 41668206
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| | ||||||||||| |  | |||||||||||||||||||||||||||||||| || |||||||||||    
T  41668284 tgtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataaaat 41668206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 41668962 - 41668884
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| | ||||||||||| |  | |||||||||||||||||||||||||||||||| || |||||||||||    
T  41668962 tgtttggataaacagcttattttgcagccgatagcataagcgcttatgaataagctatttctataacccaagataaaat 41668884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 426017 - 425965
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||| |||||||||||| ||||||||||||| |||| |||||||||||||||    
T  426017 aggccctgtttggataaataacttattttgcagcttatagcataagcgcttat 425965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 31002992 - 31002933
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctattt 168  Q
    |||||||||||| |||||| |||||| |||| ||||||||||||||||  ||||||||||    
T  31002992 tgtttggataaacaacttaatttgcatcttatagcataagcgcttatgtgtaagctattt 31002933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 44917694 - 44917634
Alignment:
Q  125 ttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaa 185  Q
    |||||||||| |||| ||||||||||||||| |||||| | ||||||| ||||| ||||||    
T  44917694 ttattttgcagcttaaagcataagcgcttataaataagttgtttctataacacaggataaa 44917634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 45530417 - 45530493
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaa 185  Q
    |||||||||||| ||||||||| ||| || ||||||||||| ||||||| |||||| ||| |   ||||||||||||    
T  45530417 tgtttggataaacaacttatttagcagctaacagcataagcacttatgactaagctttttatgaaacacaagataaa 45530493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 7644443 - 7644393
Alignment:
Q  122 aacttattttgcaacttacagcataagcgcttatgaataagctatttctat 172  Q
    |||||||||| |  |||| |||||||| |||||||||||||||||||||||    
T  7644443 aacttatttttcggcttatagcataagtgcttatgaataagctatttctat 7644393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 48131229 - 48131275
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    |||||||||| | ||||||||||||| ||||||||||||| ||||||    
T  48131229 tgtttggatacacaacttattttgcagcttacagcataagtgcttat 48131275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 46945846 - 46945883
Alignment:
Q  150 gcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  46945846 gcttatgaataagctatttgtataacacaagataaaat 46945883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 6824809 - 6824888
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagata 183  Q
    ||||| |||||||||||| |  ||| |||||| |||| ||||||| |||| ||| ||||||||||||||| ||| ||||||    
T  6824809 aggccctgtttggataaacagtttaatttgcaccttatagcataaacgct-atgtataagctatttctataacaaaagata 6824888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 46945769 - 46945821
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||| |||||||||||| |||||| |||||| |||| ||| |||||||||||    
T  46945769 aggccttgtttggataaacaacttagtttgcagcttatagcttaagcgcttat 46945821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 33080766 - 33080680
Alignment:
Q  99 cataaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaa 185  Q
    |||||| ||||| ||||||||| |  |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||| ||||||    
T  33080766 cataagaccatgcttggataaatagtttattttgcagcttatagcataagcacttatgaataagctttttctataacacaggataaa 33080680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 17241429 - 17241347
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    |||| |||||||||||  ||| ||||| ||| |||| |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  17241429 ggccctgtttggataagcaacatatttggcagcttatagcataagcgcttatgcataagctatttctataaaacacgataaaa 17241347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 3171573 - 3171526
Alignment:
Q  141 agcataagcgcttatgaataagctatttctatgacacaagataaaatt 188  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||||    
T  3171573 agcataagcgcttatgcataagctatttttataacaaaagataaaatt 3171526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 31686640 - 31686588
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||||||||| |||||  |||||| |||||| | ||||||||||||||||||    
T  31686640 aggccatgtttagataatcaacttaatttgcagcatacagcataagcgcttat 31686588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 53422266 - 53422336
Alignment:
Q  117 taaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||| |||| |||||||| |||| ||||||||| |||||||||||||||||||||  ||||||||||||||    
T  53422266 taaagaactaattttgcagcttatagcataagctcttatgaataagctatttctacaacacaagataaaat 53422336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 21470023 - 21469976
Alignment:
Q  143 cataagcgcttatgaataagctatttctatgacacaagataaaattga 190  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  21470023 cataagcgcttatgaataagctatttatgtgacacaagataaaattga 21469976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 6466220 - 6466142
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| ||||| ||||||| |||| ||| |||||||||||||||||| | ||| ||| ||||||||| ||||    
T  6466220 tgtttggataaacaacttcttttgcagcttatagcgtaagcgcttatgaataagttgtttatataacacaagatcaaat 6466142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 39178434 - 39178346
Alignment:
Q  100 ataaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatga-ataagctatttctatgacacaagataaaat 187  Q
    |||||| | |||||||||||| |||||||||| || |||| || ||||| |||||| | ||||||||||||||| || |||||||||||    
T  39178434 ataaggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttctataactcaagataaaat 39178346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 38478677 - 38478713
Alignment:
Q  148 gcgcttatgaataagctatttctatgacacaagataa 184  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38478677 gcgcttatgaataagctatttctataacacaagataa 38478713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 1965832 - 1965913
Alignment:
Q  107 catgtttggataaaaaacttattttgcaacttacagcata--agcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    |||||||||||||| |||||||||  || |||| ||||||  || |||||||||||| ||||||||||  ||||||| ||||    
T  1965832 catgtttggataaacaacttatttgacagcttatagcatataagtgcttatgaataaactatttctatagcacaagagaaaa 1965913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 4212813 - 4212874
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttcta 171  Q
    |||||||||||| |||||||||| || |||| |||| ||||| ||||| ||||||||||||||    
T  4212813 tgtttggataaacaacttatttt-cagcttatagcacaagcgattatgtataagctatttcta 4212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 11877719 - 11877789
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataa-gcgcttatgaataagctatttctatgacaca 178  Q
    |||||| ||||| |||||||||||||  ||| ||||||| ||  ||||||||||||||||||||| |||||    
T  11877719 tgtttgaataaacaacttattttgcagattatagcataaagcttttatgaataagctatttctattacaca 11877789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 55084613 - 55084571
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||    
T  55084613 ataagcgcttatgcataagctatttctttgacagaagataaaa 55084571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 17223335 - 17223286
Alignment:
Q  98 gcataaggccatgtttggataaaaaacttattttgcaacttacagcataa 147  Q
    |||||||||| ||||| |||||| |||| ||||||||||||| |||||||    
T  17223335 gcataaggccctgtttagataaacaactcattttgcaacttatagcataa 17223286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 39886766 - 39886717
Alignment:
Q  106 ccatgtttggataaaaaacttattttgcaacttacagcataagcgcttat 155  Q
    ||||||||||||||| || |||||||||| |||| ||||||| |||||||    
T  39886766 ccatgtttggataaacaaattattttgcagcttatagcataaacgcttat 39886717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 50742973 - 50742929
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaatt 188  Q
    ||||||||||||| ||||||||||| ||| |||||| ||||||||    
T  50742973 ataagcgcttatggataagctatttttataacacaacataaaatt 50742929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 9106713 - 9106798
Alignment:
Q  101 taaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    ||||||| ||||||  |||| ||||||||||||| |||| |||||||||  |||||||||||| |||||||| || ||||||||||    
T  9106713 taaggccctgtttgtgtaaacaacttattttgcagcttaaagcataagcatttatgaataagcaatttctataacccaagataaaa 9106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 10125895 - 10125818
Alignment:
Q  107 catgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataa 184  Q
    |||||||||||||| | ||||| |||||| ||| |||||||  | |||||||||||||||||||||  ||||||||||    
T  10125895 catgtttggataaacagcttatattgcaagttatagcataactgattatgaataagctatttctatatcacaagataa 10125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 18857574 - 18857496
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| ||||||||||||| |||  ||  |||| | |||||||||||||||||| || ||||| ||||||||    
T  18857574 tgtttggataaacaacttattttgcagcttgtagtgtaagtgtttatgaataagctatttcaataacacacgataaaat 18857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 11054085 - 11054160
Alignment:
Q  112 ttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||| |||||| ||| |  |||| ||||||| |||||||| ||||||||||||||| | | ||||||||||    
T  11054085 ttggataaacaacttaatttccggcttatagcataaacgcttatgtataagctatttctataataaaagataaaat 11054160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 26796338 - 26796388
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  26796338 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 26796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 26799856 - 26799906
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  26799856 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 26799906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 26807406 - 26807456
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  26807406 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 26807456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 5390228 - 5390163
Alignment:
Q  122 aacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||| |||||| |||| ||||||| ||| ||||||||| |||||||||  || |||||||||||    
T  5390228 aacttaatttgcagcttatagcataaacgcgtatgaataaactatttctactacgcaagataaaat 5390163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 38105058 - 38105005
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatga 157  Q
    |||| |||||||||||| ||||||||||||| |||| ||| |||||| ||||||    
T  38105058 ggccctgtttggataaacaacttattttgcagcttatagcgtaagcgtttatga 38105005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 50760523 - 50760588
Alignment:
Q  122 aacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||||| |||  || ||||| |||||||||||||||||||||||||| |||||||||||    
T  50760523 aacttattttgcagcttgtagtataagtgcttatgaataagctatttctatgactcaagataaaat 50760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 139913 - 139959
Alignment:
Q  141 agcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  139913 agcataagcacttatgaataagctatttctattacacaagataaaat 139959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 44295443 - 44295506
Alignment:
Q  124 cttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||| |||  || |||||||||| |||||||||||||||||| || |||||||||||    
T  44295443 cttattttgcagcttgtagtataagcgcttgtgaataagctatttctataactcaagataaaat 44295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 44014176 - 44014253
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaa 186  Q
    ||||||||||||  |||||||||||| | || ||||||| | |||||| ||||||||||||||| ||  |||||||||    
T  44014176 tgtttggataaatgacttattttgcagcctatagcataaccacttatgtataagctatttctataactaaagataaaa 44014253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 2128403 - 2128347
Alignment:
Q  131 tgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||| |||| |||||||||| ||||| ||||||||||||||| ||| ||||||||||    
T  2128403 tgcagcttatagcataagcgtttatgtataagctatttctataacaaaagataaaat 2128347  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 36587872 - 36587952
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagc-tatttctatgacacaagataaaatt 188  Q
    ||||| |||||| || ||| ||| || |||| ||||||||||||||||||||||| |||| |||| |||||||||| ||||    
T  36587872 tgtttcgataaacaatttaatttacagcttatagcataagcgcttatgaataagcttattactataacacaagatagaatt 36587952  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 34958259 - 34958302
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||    
T  34958259 ataagcacttatgaataaactatttctataacacaagataaaat 34958302  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 9995850 - 9995900
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  9995850 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 9995900  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 10131536 - 10131586
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  10131536 ggccctgtttggataaacaacttattttgcatcttattgcataagcgctta 10131586  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 10216867 - 10216917
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  10216867 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 10216917  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 10220386 - 10220436
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| ||||  |||||||||||||    
T  10220386 ggccctgtttggataaacaacttattttgcaccttatcgcataagcgctta 10220436  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 48387500 - 48387450
Alignment:
Q  104 ggccatgtttggataaaaaacttattttgcaacttacagcataagcgctta 154  Q
    |||| |||||||||||| ||||||||||||| |||| | ||||||||||||    
T  48387500 ggccttgtttggataaacaacttattttgcatcttataacataagcgctta 48387450  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 42747956 - 42747888
Alignment:
Q  103 aggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctat 172  Q
    ||||| |||||||||||| | ||||||| |||||||| |||| || ||| |||| |||||||||||||||    
T  42747956 aggccctgtttggataaacagcttattt-gcaacttatagcacaaacgcctatgtataagctatttctat 42747888  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 4090246 - 4090323
Alignment:
Q  110 gtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    ||||||||||| ||||||||||| | |||| |||||||| |  ||||||||||||||||| || ||||||||||||||    
T  4090246 gtttggataaacaacttattttgaagcttaaagcataagggtgtatgaataagctatttccataacacaagataaaat 4090323  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 41817069 - 41817136
Alignment:
Q  114 ggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaaga 181  Q
    ||||||| |||||||||||| ||||| | |||||  ||||||||||||||||||||||| ||||||||    
T  41817069 ggataaacaacttattttgccacttataacataaatgcttatgaataagctatttctataacacaaga 41817136  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 28039506 - 28039428
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||| |||||| ||||||  ||| ||||||||||| ||||||||||||||||   | ||||||||||||||    
T  28039506 tgtttggataaacaacttaatttgcagtttatagcataagcgcatatgaataagctattttggttacacaagataaaat 28039428  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 1977200 - 1977139
Alignment:
Q  100 ataaggccatgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataa 161  Q
    ||||| || |||||||||||| |||| | |||||| |||||| |||||||||||||||||||    
T  1977200 ataagaccgtgtttggataaacaactaactttgcagcttacaacataagcgcttatgaataa 1977139  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 6887419 - 6887362
Alignment:
Q  125 ttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataa 184  Q
    |||||||||| |||| |  ||||||||||||||||||||||||||||  |||||||||||    
T  6887419 ttattttgcagcttatataataagcgcttatgaataagctatttcta--acacaagataa 6887362  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 44644219 - 44644263
Alignment:
Q  101 taaggccatgtttggataaaaaacttattttgcaacttacagcat 145  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||    
T  44644219 taaggccatgtttagataaacaacttattttgcagcttacagcat 44644263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 33931709 - 33931666
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||| |||||||||||||||||| |||| |||||||||    
T  33931709 ataagcgcttgtgaataagctatttctattacactagataaaat 33931666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 38767698 - 38767624
Alignment:
Q  109 tgtttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctatttctatgacacaagataa 184  Q
    |||| ||||||| |||||| ||| || |||||| |||||||||||||||| ||| ||||||||| |||| ||||||    
T  38767698 tgttaggataaacaacttaatttccagcttacatcataagcgcttatgaacaag-tatttctattacacgagataa 38767624  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 7928433 - 7928389
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaatt 188  Q
    |||||| ||||||||||||||||||||||  || |||||||||||    
T  7928433 ataagcacttatgaataagctatttctattgcaaaagataaaatt 7928389  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 143200 - 143157
Alignment:
Q  144 ataagcgcttatgaataagctatttctatgacacaagataaaat 187  Q
    |||||||||||||||| |||||||||||| ||||||||||||||    
T  143200 ataagcgcttatgaattagctatttctataacacaagataaaat 143157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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