View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_low_8 (Length: 631)
Name: NF10923_low_8
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 43566305 - 43566608
Alignment:
| Q |
20 |
gttaaagtacactttaatccataactcataaattgttcaatagcatataagtgcagtgaagtctgaaaatctttgactgtaacacaaatataatgtcatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43566305 |
gttaaagtacactttaatccataactcataaattgttcaatagcatataagtgcagtgaagtctgaaaatctttgactgtaacacaaatataatgtcatg |
43566404 |
T |
|
| Q |
120 |
tttggacatttggatttatcaagtctagtnnnnnnnnn----gtcacatttcatctcatttgtgtgagcctaagttcaatccggacattactttaaaatt |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43566405 |
tttggacatttggatttatctagtctagtaaaaaaaaaaaaaggtacatttcatctcatttgtgtgagcctaagttcaatccggacattaccttaaaatt |
43566504 |
T |
|
| Q |
216 |
cccgcgtcaatggtatgccaaatagaacttattcttactctccaaagctaactatatttataaaacaccattggcgagtattaaattaaaaataattttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43566505 |
cccgcgtcaatggtatgccaaatagaacttattcttactctccaaagctaactatatttataaaacaccattggcgtgtattaaattaaaaataattttc |
43566604 |
T |
|
| Q |
316 |
caaa |
319 |
Q |
| |
|
|||| |
|
|
| T |
43566605 |
caaa |
43566608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University