View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_low_9 (Length: 610)
Name: NF10923_low_9
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 205 - 598
Target Start/End: Original strand, 43876371 - 43876764
Alignment:
| Q |
205 |
aattaatgaattttcaggctgaaggaatatttcgtataaatccagaaaatggcgaagaggaacatttgagggagcaattgaatagtggcattgtgccaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876371 |
aattaatgaattttcaggctgaaggaatatttcgtataaatccagaaaatggcgaagaggaacatttgagggagcaattgaatagtggcattgtgccaaa |
43876470 |
T |
|
| Q |
305 |
tgacattgatgttcattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876471 |
tgacattgatgttcattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaa |
43876570 |
T |
|
| Q |
405 |
tgcaacactgaagaagaatctgttgagcttgtgaaccagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtag |
504 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876571 |
tgcaacactgaagaagaatctgttgagcttgtgaagcagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtag |
43876670 |
T |
|
| Q |
505 |
ttgaagaggagtgtaacaaaatggatgctagaaatattgcaatggtttttgctccaaatatgactcaggtatgcttatgtgattgcactttttg |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876671 |
ttgaagaggagtgtaacaaaatggatgctagaaatattgctatggtttttgctccaaatatgactcaggtatgcttatgtgattgcactttttg |
43876764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 205 - 598
Target Start/End: Original strand, 31295974 - 31296367
Alignment:
| Q |
205 |
aattaatgaattttcaggctgaaggaatatttcgtataaatccagaaaatggcgaagaggaacatttgagggagcaattgaatagtggcattgtgccaaa |
304 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31295974 |
aattaatgaattttcaggctgcaggaatattttgtataaatctagaaaacggtgaagaggaacatttgagggagcaattcaatagtggcattgtgccaat |
31296073 |
T |
|
| Q |
305 |
tgacattgatgttcattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaa |
404 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31296074 |
tgacattgatgtacattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaa |
31296173 |
T |
|
| Q |
405 |
tgcaacactgaagaagaatctgttgagcttgtgaaccagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtag |
504 |
Q |
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||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31296174 |
tgcaacactgaagaagaatttgttgagcttgtgaagctgctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtag |
31296273 |
T |
|
| Q |
505 |
ttgaagaggagtgtaacaaaatggatgctagaaatattgcaatggtttttgctccaaatatgactcaggtatgcttatgtgattgcactttttg |
598 |
Q |
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|||||||||||| ||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31296274 |
ttgaagaggagtataacaaattgaatgctataaatattgctatggtttttgctccaaatatgactcaggtatgcttatgtgcttgcactttttg |
31296367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 43876168 - 43876343
Alignment:
| Q |
1 |
ttagtgtgtttggtgtctcagcagaatcaatgcaatgttcttatgattcaaaaggaaacagtgtccccactattctgttactgatgcaggagaggttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43876168 |
ttagtgtgtttggtgtctcagcagaatcaatgcaatgttcttatgattcaaaaggaaacagtgtccccactattctgttactgatgcaggagaggttata |
43876267 |
T |
|
| Q |
101 |
ctcacagggaggattaaaggtaagtacaaaatttatgatatatgtcagttttccagattaatgtgaaccaactataa |
177 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
43876268 |
ctcacagggaggattaaaggtaagtacaaaatttatgatatgtgtcagttttccagatt-atgtgaaccaactataa |
43876343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 31295771 - 31295947
Alignment:
| Q |
1 |
ttagtgtgtttggtgtctcagcagaatcaatgcaatgttcttatgattcaaaaggaaacagtgtccccactattctgttactgatgcaggagaggttata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31295771 |
ttagtgtgtttggtgtctcagtagaatcaatgcaatgttcttatgattcaaaaggaaacagtgtccccgctattctgttactgatgcaggagaggttata |
31295870 |
T |
|
| Q |
101 |
ctcaca-gggaggattaaaggtaagtacaaaatttatgatatatgtcagttttccagattaatgtgaaccaactataa |
177 |
Q |
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| T |
31295871 |
ctcacaggggaggactaaaggtaagtacaaaatttatgatatatgtcagttttccagatt-atgtgaaccaactataa |
31295947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 209 - 575
Target Start/End: Complemental strand, 39991424 - 39991058
Alignment:
| Q |
209 |
aatgaattttcaggctgaaggaatatttcgtataaatccagaaaatggcgaagaggaacatttgagggagcaattgaatagtggcattgtgccaaatgac |
308 |
Q |
| |
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|||||| |||||||||||||| ||||| || ||||| || |||||| | | ||||| ||| ||||| | || ||||||||||| ||||||||| ||||| |
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| T |
39991424 |
aatgaaatttcaggctgaaggtatattccgcataaacccggaaaatagtaaggaggagcatgtgaggaaccagttgaatagtggaattgtgccagatgac |
39991325 |
T |
|
| Q |
309 |
attgatgttcattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaatgca |
408 |
Q |
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|||||||| || |||||||| || |||| ||||| ||||| | || |||||||| ||||| ||||||||||||| |||||| |||||||||| |||| |
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| T |
39991324 |
attgatgtccactgcttggcgggactaatcaaagcgtggttccgagagcttccttcgggagtactagatggactttcccctgagcaagttcttgagtgca |
39991225 |
T |
|
| Q |
409 |
acactgaagaagaatctgttgagcttgtgaaccagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtagttga |
508 |
Q |
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|||| |||||||||||| ||||||||||||| ||||| |||||| ||| || || || || | ||||||| ||||||| |||||||||||||| || |
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| T |
39991224 |
acacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttactcagttgggctattgatctcatggctgatgttgtccaaga |
39991125 |
T |
|
| Q |
509 |
agaggagtgtaacaaaatggatgctagaaatattgcaatggtttttgctccaaatatgactcaggta |
575 |
Q |
| |
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||||||| |||||||||| |||| ||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
39991124 |
ggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
39991058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 39991629 - 39991510
Alignment:
| Q |
3 |
agtgtgtttggtgtctcagcagaatcaatgcaatgttcttatgattcaaaaggaaacagtgtccccactattctgttactgatgcaggagaggttatact |
102 |
Q |
| |
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||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || |||||||| | ||||| | |
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| T |
39991629 |
agtgtgtttggagtgtcagcagaatccatgcagtgttcttatgattcaaaaggaaacagtgtccctactattctcatgctaatgcaggaccgtttatatt |
39991530 |
T |
|
| Q |
103 |
cacagggaggattaaaggta |
122 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
39991529 |
cacagggaggattaaaggta |
39991510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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