View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10924_high_2 (Length: 361)
Name: NF10924_high_2
Description: NF10924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10924_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 3127520 - 3127820
Alignment:
| Q |
19 |
gtgggagtcactacatagaaacatcttgatggctctgagctctgctactactatatgtaatccacgaacgcaaacttcttactctgc--ttgagacaaat |
116 |
Q |
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| T |
3127520 |
gtgggagtcactacatagaaacatcctgatggctctgagctctg---ctactatatgtaatccacgaacgcaaacttcttactctgcttttgagacagat |
3127616 |
T |
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| Q |
117 |
acaaagcatcactacctaggtaacaataaaatgctattaaacattcgaccaccggttctaaaaacttgcatgccagtttgagttttatatgcatttgata |
216 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3127617 |
acaaagcatcactac------------------ctattaaacattcaaccaccggttctaaaaacttgcatgccagtttgagttttatatgcatttgata |
3127698 |
T |
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| Q |
217 |
---aannnnnnnagaaattatgaaagtgtatgttagaaatctacactttcttcactaatgccacaatattgtaattttctgactcctatttttatagagc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3127699 |
ttttttttttttagaaattatgaaagtgtatgttagaaatctacactttcttcactaatgccacaatattgtaattttctgact---------------c |
3127783 |
T |
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| Q |
314 |
aataatctcctaatcttttctgttttacgtgtttcat |
350 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3127784 |
aataatctcctaatcttttctgttttacgtgtttcat |
3127820 |
T |
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