View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10924_high_5 (Length: 239)
Name: NF10924_high_5
Description: NF10924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10924_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3285956 - 3286186
Alignment:
| Q |
1 |
tcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttcctagtaccattaccatcactgttcctttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3285956 |
tcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttccgagtaccattaccatcactgttcctttgc |
3286055 |
T |
|
| Q |
101 |
tcttttttcaccttttccagttttacccttcttctcttaccataataattatgattctcttcactcttcagtgttcacctttgatatcgatcacaattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3286056 |
tcttttttcaccttttccagttttacccttcttctcttaccataataattatgattctcttcactcttcagtgttcacctttgatatcaatcacaattaa |
3286155 |
T |
|
| Q |
201 |
cactgcaataacaccaccttcttgttcttct |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
3286156 |
cactgcaataataccaccttcttgttcttct |
3286186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University