View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10924_high_6 (Length: 234)
Name: NF10924_high_6
Description: NF10924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10924_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 41544585 - 41544369
Alignment:
| Q |
18 |
aactcatacattaacattatttgtcttcaaaagtacaattttgtatatatgatatacgagtattatcacagacacttcaaattaaaagtgtgtctgatca |
117 |
Q |
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| T |
41544585 |
aactcatacattaacattatttgtcttcaaaagtacaattttgtatatatgatatacgagtattatcacagacacttcagattaaaagtgtgtctgatca |
41544486 |
T |
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| Q |
118 |
atgtatgtgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatataacaaacctgtttccaagaa |
217 |
Q |
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| T |
41544485 |
atgtatgcgtacatctcagtgtgtgtccaatgtatgtattagcgtctgttgtgtgactgtgtcggtgcttcatataatataacaaacctgtttccaagaa |
41544386 |
T |
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| Q |
218 |
gtttgtgaagcctaata |
234 |
Q |
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| T |
41544385 |
gtttgtgaagcctaata |
41544369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 40843622 - 40843594
Alignment:
| Q |
85 |
acagacacttcaaattaaaagtgtgtctg |
113 |
Q |
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| T |
40843622 |
acagacacttcaaattaaaagtgtgtctg |
40843594 |
T |
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