View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10924_low_3 (Length: 298)
Name: NF10924_low_3
Description: NF10924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10924_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 3725470 - 3725734
Alignment:
| Q |
16 |
atgaaccttatatcagaatannnnnnnaacacacacgctcgcacgcacaaacacaattaagtcaaatgtatatgaaggtgtgttgtgtgatatacaagaa |
115 |
Q |
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| T |
3725470 |
atgaaccttatatcagaatatttttt-aacacacacgctcgcacgcacaaacacaattgactcaaatgtatatgaaggtgtgttgtgtgatatacaagaa |
3725568 |
T |
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| Q |
116 |
tgctcaaaaagcataagtaatgtttggtattgactcatttacactgaagacaaatgtatgaagcatatcttagaacaatgtgttacgttttatttcttat |
215 |
Q |
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| T |
3725569 |
tgctcaaaaagcacaagtaatgtttggtattgactcatttacaccgaagacaaatgtatgaagcatatcttagaacaatgtgttacgttttatttcttat |
3725668 |
T |
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| Q |
216 |
agcaagcaacnnnnnnnntgtgtccctccataaagactaaaaatacatattattagtggcccttat |
281 |
Q |
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| T |
3725669 |
agtaagcaaaaaaaaaaatgtgtccctccataaagactaaaaatacatattattagcggcccttat |
3725734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 3723850 - 3723976
Alignment:
| Q |
81 |
atgtatatgaaggtgtgttgtgtgatatacaagaatgctcaaaaagcataagtaatgtttggtattgactca-tttacactgaagacaaatgtatgaagc |
179 |
Q |
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| T |
3723850 |
atgtatatgaagatgtgtt-tgtgaaatacaagtgcgctcaagaagcacaagtaacgtttgatcttgactcactttacactaaagacataagtatgaagt |
3723948 |
T |
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| Q |
180 |
atatcttagaacaatgtgttacgttttat |
208 |
Q |
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| T |
3723949 |
gt-tcttacaacaatgtgttacattttat |
3723976 |
T |
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