View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_high_10 (Length: 447)

Name: NF10925_high_10
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_high_10
NF10925_high_10
[»] chr4 (12 HSPs)
chr4 (12-294)||(52813953-52814236)
chr4 (12-207)||(41879431-41879627)
chr4 (59-178)||(40483746-40483865)
chr4 (69-178)||(52619512-52619621)
chr4 (67-158)||(20543688-20543779)
chr4 (117-171)||(9690012-9690066)
chr4 (77-178)||(18443375-18443476)
chr4 (113-171)||(48029240-48029298)
chr4 (118-171)||(53569599-53569652)
chr4 (71-171)||(27299756-27299856)
chr4 (71-104)||(19119734-19119767)
chr4 (66-146)||(56337943-56338023)
[»] chr1 (8 HSPs)
chr1 (12-294)||(5287465-5287748)
chr1 (307-429)||(48390913-48391035)
chr1 (14-165)||(40563950-40564101)
chr1 (46-178)||(18959771-18959903)
chr1 (78-181)||(28357471-28357574)
chr1 (71-171)||(13868265-13868365)
chr1 (67-171)||(33150585-33150689)
chr1 (114-171)||(49458320-49458377)
[»] chr7 (8 HSPs)
chr7 (12-293)||(27096609-27096891)
chr7 (12-293)||(27181412-27181694)
chr7 (12-178)||(8723514-8723680)
chr7 (63-183)||(27724546-27724666)
chr7 (59-178)||(44846215-44846334)
chr7 (65-178)||(34103062-34103175)
chr7 (59-97)||(13845519-13845557)
chr7 (119-171)||(19512008-19512060)
[»] chr2 (8 HSPs)
chr2 (7-290)||(1159333-1159617)
chr2 (12-102)||(38927552-38927642)
chr2 (63-171)||(6823004-6823112)
chr2 (67-158)||(11195954-11196045)
chr2 (65-156)||(18634570-18634661)
chr2 (76-171)||(31265815-31265910)
chr2 (74-178)||(7300261-7300364)
chr2 (67-148)||(44941260-44941341)
[»] chr5 (8 HSPs)
chr5 (99-294)||(374769-374965)
chr5 (65-178)||(379496-379609)
chr5 (77-174)||(14055095-14055192)
chr5 (113-178)||(13735380-13735445)
chr5 (119-180)||(26904617-26904678)
chr5 (46-171)||(35378579-35378704)
chr5 (66-171)||(5909508-5909613)
chr5 (65-104)||(16906942-16906981)
[»] chr3 (14 HSPs)
chr3 (54-292)||(13700559-13700798)
chr3 (12-206)||(7935497-7935691)
chr3 (14-178)||(21399966-21400130)
chr3 (14-169)||(47748755-47748910)
chr3 (66-171)||(34829009-34829114)
chr3 (118-178)||(14306855-14306915)
chr3 (63-178)||(46249299-46249414)
chr3 (65-178)||(35216345-35216458)
chr3 (116-178)||(4963947-4964009)
chr3 (77-178)||(5789937-5790038)
chr3 (119-178)||(15275474-15275533)
chr3 (74-178)||(2427733-2427837)
chr3 (116-176)||(15792748-15792808)
chr3 (119-183)||(19874830-19874894)
[»] scaffold0189 (1 HSPs)
scaffold0189 (12-292)||(5558-5837)
[»] chr8 (6 HSPs)
chr8 (12-163)||(12247935-12248086)
chr8 (65-178)||(15438752-15438865)
chr8 (65-178)||(15530056-15530169)
chr8 (71-178)||(9510379-9510486)
chr8 (116-178)||(6244732-6244794)
chr8 (76-176)||(9492264-9492363)
[»] chr6 (6 HSPs)
chr6 (46-178)||(14497723-14497853)
chr6 (65-178)||(31706354-31706467)
chr6 (114-156)||(33095576-33095618)
chr6 (119-183)||(29977513-29977577)
chr6 (74-178)||(6936975-6937079)
chr6 (119-183)||(19349523-19349587)
[»] scaffold0246 (1 HSPs)
scaffold0246 (59-178)||(21685-21804)
[»] scaffold0321 (1 HSPs)
scaffold0321 (65-183)||(17618-17736)
[»] scaffold0048 (2 HSPs)
scaffold0048 (65-179)||(50898-51012)
scaffold0048 (65-179)||(64193-64307)
[»] scaffold0555 (1 HSPs)
scaffold0555 (114-171)||(7258-7315)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 52814236 - 52813953
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    ||||| |||||| |||||| || || |||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||    
T  52814236 atgaaagaaacaacagattgttcaacaacatagcaacacctattgagcagttattcgataaagtaaaatttcattcgttgtggtggcttaaagccaacaa 52814137  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgacagttgt 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  52814136 aatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgacttttccttgtaattatactttgtgacagttgt 52814037  T
Q  212 ttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcgc-gaagttataatatttcattttcatttctcc 294  Q
     |||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  52814036 ctttaccggggtggaacattttagtacaccttgtactaaagcgtttccatcgctgaagttataatatttcatttttatttctcc 52813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 41879431 - 41879627
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    |||||||||||| |||| | || || ||||| | |||| ||||||||||  | |||||||||||||||||||| |||||||||||  | ||||  || ||    
T  41879431 atgaacgaaacaacagactgttcaataacactgaaacatctattgagcaactcttagataaagttaaatttcactcgttgtggtgattaaaagctaataa 41879530  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttc-cttataattatactttgtgacag 207  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||  |||| | ||||| |||||| ||||| ||| ||| |||||||||||||||    
T  41879531 aaccacttttatgtacggttctcaaaactggtggtcgaaccctttactttgtctaggtatcgactgacttttctcttgtaaatatactttgtgacag 41879627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 40483865 - 40483746
Alignment:
Q  59 cagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttat 158  Q
    ||||| |||||| ||||||||||||||||  | |||||||||||||  || ||  |||| |||||| |||||||||| || ||||||||| |||| ||||    
T  40483865 cagttattagatcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttat 40483766  T
Q  159 attgtttgggtattgactga 178  Q
      ||||||||| ||||||||    
T  40483765 tgtgtttgggtcttgactga 40483746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 52619512 - 52619621
Alignment:
Q  69 ataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttggg 168  Q
    |||||| ||||||||||||| | |||||||| |||| ||| || |||| |||||||||| | ||||| || ||||||||| |||||||  | ||||||||    
T  52619512 ataaagctaaatttcattcgctttggtggctaaaagccaaaaacaccaattttgtgtacagctctcagagatggtggtcggacccttttcagtgtttggg 52619611  T
Q  169 tattgactga 178  Q
    ||| ||||||    
T  52619612 tatcgactga 52619621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 20543779 - 20543688
Alignment:
Q  67 agataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttat 158  Q
    ||||||||||| ||||||||| || |||||||||||||  |||||| ||| |||| |||| ||| | ||||| ||||||||| |||||||||    
T  20543779 agataaagttagatttcattctttatggtggcttaaagctaacaaagccaattttatgtatggtacccaaagatggtggtcggaccctttat 20543688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 9690066 - 9690012
Alignment:
Q  117 cttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||    
T  9690066 cttttgtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtat 9690012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 18443375 - 18443476
Alignment:
Q  77 aaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgact 176  Q
    |||||||||||||| |||||| | ||||   | || ||||||||||||||| ||||||| |  ||||||||||||||||||  ||||||| |||| ||||    
T  18443375 aaatttcattcgttttggtggttaaaagttgataacaccacttttgtgtacagttctcagaaatggtggtcgaaccctttactttgtttgagtatcgact 18443474  T
Q  177 ga 178  Q
    ||    
T  18443475 ga 18443476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 48029298 - 48029240
Alignment:
Q  113 accacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||| ||||||||||||||||||||| ||||||||| ||| ||| | ||||||||||||    
T  48029298 accaattttgtgtacggttctcaaagatggtggtcggaccatttgttttgtttgggtat 48029240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 53569652 - 53569599
Alignment:
Q  118 ttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||||||||||||||||| || ||||||||| ||||||||  ||||||||||||    
T  53569652 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtat 53569599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 27299856 - 27299756
Alignment:
Q  71 aaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggta 170  Q
    ||||| || ||||| || || |||||||||||||  || || |||||||||||| ||||| |||| || ||||||| | |||||||||  ||||||||||    
T  27299856 aaagtaaagtttcactctttttggtggcttaaagctaataagaccacttttgtgcacggtactcacagatggtggttggaccctttattatgtttgggta 27299757  T
Q  171 t 171  Q
    |    
T  27299756 t 27299756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 19119767 - 19119734
Alignment:
Q  71 aaagttaaatttcattcgttgtggtggcttaaag 104  Q
    |||||||||||||||||||| |||||||||||||    
T  19119767 aaagttaaatttcattcgttatggtggcttaaag 19119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 56337943 - 56338023
Alignment:
Q  66 tagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggt 146  Q
    ||||||| ||||||| |  ||| ||||||||||| ||||  |||||  |||||||||| || ||||||||||| |||||||    
T  56337943 tagataaggttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggt 56338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 5287748 - 5287465
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    ||||| |||||| |||||| || || |||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||    
T  5287748 atgaaagaaacaacagattgttcaacaacatagcaacacctattgagcagttattcgataaagtaaaatttcattcgttgtggtggcttaaagccaacaa 5287649  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgacagttgt 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  5287648 aatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgacttttccttgtaattatactttgtgacagttgt 5287549  T
Q  212 ttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcgc-gaagttataatatttcattttcatttctcc 294  Q
     |||||  |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||    
T  5287548 ctttaccggggtggaacattttagtacaccttgtactaaagcgtttccatcactgaagttataatatttcatttttatttctcc 5287465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 307 - 429
Target Start/End: Complemental strand, 48391035 - 48390913
Alignment:
Q  307 gtaactatgtatgattttatttcccccagccatcattgaaactttgaaatcatattatgtcactcaaaaacccaaccatgtcggtccctcactttcttca 406  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48391035 gtaactatgtatgattttatttcccctagccatcattgaaactttgaaatcatattatgtcactcaaaaacccaaccatgttggtccctcactttcttca 48390936  T
Q  407 tacataagacttgaccgctatac 429  Q
    |||||||||||||||||||||||    
T  48390935 tacataagacttgaccgctatac 48390913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 40563950 - 40564101
Alignment:
Q  14 gaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaa 113  Q
    |||||||||| || | | || |||||||| | |||||||||||||||  | ||| ||||||||||||| |||| ||||||||||||||||| ||| || |    
T  40563950 gaacgaaacaacaaactgttcaaaaacactgaaacacctattgagcaactattatataaagttaaattccatttgttgtggtggcttaaagccaataata 40564049  T
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgttt 165  Q
    ||| |||||||||| ||||||||||||||||||| |||| | || |||||||    
T  40564050 ccatttttgtgtacagttctcaaagttggtggtcaaaccatctacattgttt 40564101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 18959903 - 18959771
Alignment:
Q  46 aacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtgg 145  Q
    |||||||||| | ||| | ||||| ||||||||| ||||||| ||||||||| | |||| ||| ||||| |||||||||||| | ||| | || ||||||    
T  18959903 aacacctattaaacagctcttagaaaaagttaaacttcattcattgtggtggttaaaagccaataaaactacttttgtgtacagatctaagagctggtgg 18959804  T
Q  146 tcgaaccctttatattgtttgggtattgactga 178  Q
    ||| ||| ||||  |||| | ||||| ||||||    
T  18959803 tcggaccttttactttgtctaggtatcgactga 18959771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 28357574 - 28357471
Alignment:
Q  78 aatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactg 177  Q
    |||||||||| || |||||||| ||||   | || |||| |||||||||| ||||||| | |||||||||  |||| ||| ||||||||||||| |||||    
T  28357574 aatttcattctttatggtggctaaaagctcataacaccatttttgtgtacagttctcataattggtggtcagaccccttacattgtttgggtatcgactg 28357475  T
Q  178 attt 181  Q
    ||||    
T  28357474 attt 28357471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 13868265 - 13868365
Alignment:
Q  71 aaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggta 170  Q
    |||||||||| ||| || ||||||||||| ||||  || ||  ||| |||| |||||||| | ||||| ||||||||| |||||||||  ||||||||||    
T  13868265 aaagttaaatatcactctttgtggtggctaaaagctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttattatgtttgggta 13868364  T
Q  171 t 171  Q
    |    
T  13868365 t 13868365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 33150689 - 33150585
Alignment:
Q  67 agataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttg 166  Q
    ||||||||| | |||||| || || |||||||||||||  ||||||  || |||| |||||||| ||||||| ||||||||| | |||||||  ||| ||    
T  33150689 agataaagtaagatttcactctttatggtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcggaacctttattatgtctg 33150590  T
Q  167 ggtat 171  Q
    |||||    
T  33150589 ggtat 33150585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 49458377 - 49458320
Alignment:
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||| ||||||||||||| |||||| ||||||||| ||||| |  |||||||||||||    
T  49458377 ccacatttgtgtacggttatcaaaggtggtggtcggaccctatgcattgtttgggtat 49458320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 27096891 - 27096609
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    |||||||||||| ||||||  | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27096891 atgaacgaaacaacagattgatcaaaaacactgcaacacctattgaacagttgttagataaagttaaatttcattcgttgtggtggcttaaagccaacaa 27096792  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgacag-ttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||    
T  27096791 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgactttttcttataattatactttgtgacagtttg 27096692  T
Q  211 tttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcg-cgaagttataatatttcattttcatttctc 293  Q
    |||||||| || | || || ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||    
T  27096691 tttttactgggttagatca-tttagtacaccttgtactaaagcgtttccatcgccgtagttataatatttcattttgatttctc 27096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 27181412 - 27181694
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    |||||||||||| ||||||  | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27181412 atgaacgaaacaacagattgatcaaaaacactgcaacacctattgaacagttgttagataaagttaaatttcattcgttgtggtggcttaaagccaacaa 27181511  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgacag-ttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||    
T  27181512 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgactttttcttataattatactttgtgacagtttg 27181611  T
Q  211 tttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcg-cgaagttataatatttcattttcatttctc 293  Q
    |||||||| || | || || ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||    
T  27181612 tttttactgggttagatca-tttagtacaccttgtactaaagcgtttccatcgccgtagttataatatttcattttgatttctc 27181694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 8723514 - 8723680
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggc-aaca 110  Q
    ||||| |||||| |||||| || || ||||  | ||||||||||||  || | ||||  ||||| |||| |||||| ||||||||| |||||| | || |    
T  8723514 atgaaagaaacaacagattgttcaataacattgaaacacctattgataagctcttaggaaaagtgaaatatcattctttgtggtgg-ttaaagtccaata 8723612  T
Q  111 aaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    |||||||||||||||||||| |||| | ||| |||||||||||||||| |||| | ||||| ||||||    
T  8723613 aaaccacttttgtgtacggtcctcagaattgttggtcgaaccctttatcttgtctaggtatcgactga 8723680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 27724546 - 27724666
Alignment:
Q  63 tgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattg 162  Q
    ||||||| ||||  |||| ||||||||| |||||| | ||||  |  || |||| |||| |||||||||||||||| ||||||||| | ||||||  |||    
T  27724546 tgttagaaaaagcaaaatatcattcgttatggtggttaaaagctagtaacaccaattttatgtacggttctcaaagatggtggtcggatcctttactttg 27724645  T
Q  163 tttgggtattgactgattttt 183  Q
    ||||||||| |||||| ||||    
T  27724646 tttgggtatcgactgactttt 27724666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 44846215 - 44846334
Alignment:
Q  59 cagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttat 158  Q
    ||||| |||||| |||||||||||||||| || |||||  ||||||  || || ||||| |||||| |||||||||| || || |||| | |||| ||||    
T  44846215 cagttattagatcaagttaaatttcattctttatggtgatttaaagctaataataccacatttgtgcacggttctcagagatgatggttggaccccttat 44846314  T
Q  159 attgtttgggtattgactga 178  Q
      ||||||||| ||||||||    
T  44846315 tgtgtttgggtcttgactga 44846334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 34103175 - 34103062
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| || ||||||||||||||||| || |||||||||| ||| ||  ||| |||||||| ||| || || || ||||||||| ||| ||||  || ||    
T  34103175 ttagagaatgttaaatttcattcgttttgatggcttaaagccaataatgccaattttgtgtgcgggtcgcagagatggtggtcggaccatttactttatt 34103076  T
Q  165 tgggtattgactga 178  Q
    ||||||| ||||||    
T  34103075 tgggtatcgactga 34103062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 13845519 - 13845557
Alignment:
Q  59 cagttgttagataaagttaaatttcattcgttgtggtgg 97  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  13845519 cagttgttagataaagttaaatttcattcattttggtgg 13845557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 19512060 - 19512008
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    ||||||||||||||||| || ||||||||| ||||| |  |||||||||||||    
T  19512060 tttgtgtacggttctcagagatggtggtcggaccctatgaattgtttgggtat 19512008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 1159333 - 1159617
Alignment:
Q  7 gtgagatgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggc 106  Q
    |||| |||||||||||| || ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  1159333 gtgaaatgaacgaaacaacaaattgttcaaaaacactgcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaagct 1159432  T
Q  107 aacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgaca 206  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  1159433 aaaaaaaccacttttgtgtacggttctcaaaattggtggtcgaaccctttatattgtttgggtattgaccgactttttcttataattatactttgtgaca 1159532  T
Q  207 g-ttgtttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcgc-gaagttataatatttcattttcattt 290  Q
    | ||||||||||  || ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  1159533 gtttgtttttaccgggttggaaca-tttagtacaccttgtactaaagcgtttccatcgctgaagttataatatttcattttgattt 1159617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 38927552 - 38927642
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaa 102  Q
    |||||| ||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38927552 atgaacaaaacaacagattgttcaaaaacactgcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaa 38927642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 6823112 - 6823004
Alignment:
Q  63 tgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattg 162  Q
    ||||||| ||||  |||| ||||||||| |||||| | ||||  || || |||| ||||||||||||||||||||| ||||||||||||||||||  |||    
T  6823112 tgttagaaaaagcaaaatatcattcgttatggtggttaaaagctaataacaccaattttgtgtacggttctcaaagatggtggtcgaaccctttactttg 6823013  T
Q  163 tttgggtat 171  Q
    |||||||||    
T  6823012 tttgggtat 6823004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 11196045 - 11195954
Alignment:
Q  67 agataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttat 158  Q
    ||||||||| |||||||| || || |||||||||||||  ||||||  || |||| ||| |||| ||||||| ||||||||| |||||||||    
T  11196045 agataaagtaaaatttcactctttatggtggcttaaagctaacaaagtcaattttatgttcggtactcaaagatggtggtcggaccctttat 11195954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 18634661 - 18634570
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaacccttt 156  Q
    ||||| |||||||||||||||| ||| ||||| |||||||  || || ||||| |||||||| || ||||| || ||||||||| |||||||    
T  18634661 ttagaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggacccttt 18634570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 31265910 - 31265815
Alignment:
Q  76 taaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||||| |||||||| | |||||| ||||   | || |||||||||||||| | ||||||||| ||||||||| ||||||||  ||||||||||||    
T  31265910 taaattccattcgttttagtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtat 31265815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 7300364 - 7300261
Alignment:
Q  74 gttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattg 173  Q
    ||||||||||| ||||| | ||||||||||| ||| |   |||| ||||||| ||||| |||||| ||||||||| ||||||| |  ||||||||||| |    
T  7300364 gttaaatttcactcgttttagtggcttaaagccaatatg-ccacgtttgtgtgcggttgtcaaagatggtggtcggaccctttgttatgtttgggtatcg 7300266  T
Q  174 actga 178  Q
    |||||    
T  7300265 actga 7300261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 44941260 - 44941341
Alignment:
Q  67 agataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 148  Q
    ||||||||| || ||||||||||| |||||||| ||||  |||||   ||| |||||||||||||| || || |||||||||    
T  44941260 agataaagtaaagtttcattcgttttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcg 44941341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 374769 - 374965
Alignment:
Q  99 ttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatact 198  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||    
T  374769 ttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttggatatcgactgacttttccttgtaattatact 374868  T
Q  199 ttgtgacagttgtttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcgc-gaagttataatatttcattttcatttctcc 294  Q
     | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  374869 ctctgacagttgtttttaccggggtggaacattttagtacaccttgtactaaagcgtttccatcgctgaagttataatatttcattttcatttctcc 374965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 379609 - 379496
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| |||||||||||||||||||| ||||||||||| |  || ||  | | ||||||||||| | |||| |||||||||||| ||||||| |||||||    
T  379609 ttagagaaagttaaatttcattcgttatggtggcttaaggctaagaacgctaattttgtgtacgatactcagagttggtggtcggaccctttgtattgtt 379510  T
Q  165 tgggtattgactga 178  Q
    ||||||| ||||||    
T  379509 tgggtatcgactga 379496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 14055095 - 14055192
Alignment:
Q  77 aaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattga 174  Q
    |||| ||||||||| |||||| | ||||  || || |||| ||||||||| ||||||||||| |||||| || ||||||||| |||||||||||||||    
T  14055095 aaatatcattcgttttggtggttgaaagataataacaccaattttgtgtatggttctcaaagatggtggccggaccctttattttgtttgggtattga 14055192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 13735380 - 13735445
Alignment:
Q  113 accacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||   ||||||||||||||||||    
T  13735380 accacttttgtgtacggctcttagagatggtggtcgaaccctttactgtgtttgggtattgactga 13735445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 26904617 - 26904678
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatt 180  Q
    |||||||| |||||||| |||||||||||| ||| |||| ||||||||||||| ||||||||    
T  26904617 tttgtgtatggttctcagagttggtggtcggaccatttacattgtttgggtatcgactgatt 26904678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 35378579 - 35378704
Alignment:
Q  46 aacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtgg 145  Q
    |||||||||||| ||  | ||||| ||||| |||| |||||  ||||| ||||| || | ||| |||| ||||||||||||||||  ||| | |||||||    
T  35378579 aacacctattgatcaactcttagaaaaagtgaaatatcattttttgtgatggctaaaggccaataaaatcacttttgtgtacggtattcagaattggtgg 35378678  T
Q  146 tcgaaccctttatattgtttgggtat 171  Q
    ||||||| ||||| |||| |||||||    
T  35378679 tcgaaccgtttatcttgtctgggtat 35378704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 5909508 - 5909613
Alignment:
Q  66 tagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgttt 165  Q
    |||| ||||| |||||||| ||||  |||||||| ||||  || ||  ||||||||||||||| |||||| || ||||||||| |||||||   ||||||    
T  5909508 tagagaaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgttt 5909607  T
Q  166 gggtat 171  Q
    ||||||    
T  5909608 gggtat 5909613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 16906981 - 16906942
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaag 104  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  16906981 ttagagaaagttaaatttcattcgttttggtggcttaaag 16906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 292
Target Start/End: Original strand, 13700559 - 13700798
Alignment:
Q  54 ttgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccc 153  Q
    |||||||| ||||||||||||| ||||||||||  ||||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  13700559 ttgagcagctgttagataaagtaaaatttcatttcttgtggtggcttaaagttaacaaaatcacttttgtgtacgtttctcaaagttggtggtcgaaccc 13700658  T
Q  154 tttatattgtttgggtattgactgatttttccttataattatactttgtgacag-ttgtttttactagggtggaacattttagtacaccttgtactaaag 252  Q
    |||||||||||||||||| |||||| |||  ||| ||||||||||||||||||| ||||||||   ||| |||| || ||||||||||||||||||||||    
T  13700659 tttatattgtttgggtatcgactgactttctcttgtaattatactttgtgacagtttgtttttgtcaggttggatca-tttagtacaccttgtactaaag 13700757  T
Q  253 cgttttcatcg-cgaagttataatatttcattttcatttct 292  Q
     |||||||||| || |||||| |||||||||||| ||||||    
T  13700758 tgttttcatcgccgtagttattatatttcattttgatttct 13700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 7935691 - 7935497
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    |||||||||||| |||  | || |||||||| | |||||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  7935691 atgaacgaaacaacaggctgttcaaaaacactgaaacacctattgaacagctgttagataaagtaaaatttcattctttgtggtggcttaaagccaacaa 7935592  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgaca 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |||||| ||||  || ||||||||||||||||||    
T  7935591 aaccacttttgtgtacggttctcaaagttggtagtcgaaccctttttattgtctgggtatcgactgacttttatttgtaattatactttgtgaca 7935497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 21400130 - 21399966
Alignment:
Q  14 gaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaa 113  Q
    |||||||||| |||| |||| |||||||| | |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| || |    
T  21400130 gaacgaaacaacagactattcaaaaacactgaaacacctattgagcagctattagataaagttaaatttcattcgttgtggtggcttaaagccaataata 21400031  T
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||    
T  21400030 ccacttttgtgtacggttctcaaagttggtggtcgaaccctctacattgtttgggtgtcgactga 21399966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 47748910 - 47748755
Alignment:
Q  14 gaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaa 113  Q
    |||||||| | |||||| || |||||||| | |||||||||||| ||  | ||| |||||||||||||||||||||||||||||||||||| ||| || |    
T  47748910 gaacgaaataacagattgttcaaaaacactgaaacacctattgaacaactattaaataaagttaaatttcattcgttgtggtggcttaaagccaataata 47748811  T
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggt 169  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  47748810 ccacttttgtgtacggttctcaaagttggtggtcgaaccctctacattgtttgggt 47748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 34829114 - 34829009
Alignment:
Q  66 tagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgttt 165  Q
    |||| |||||||||||||| || || |||||||||||||  || ||  |||||||| |||||| ||||||||| |||||||||||||||||||  |||||    
T  34829114 tagaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaaccctttattatgttt 34829015  T
Q  166 gggtat 171  Q
    | ||||    
T  34829014 gagtat 34829009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 14306915 - 14306855
Alignment:
Q  118 ttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||    
T  14306915 ttttgtgtacggttctcagagatggtggtcgaaccctttattttgtttgggtatcgactga 14306855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 46249299 - 46249414
Alignment:
Q  63 tgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattg 162  Q
    ||||||| ||||  |||| ||||||||| |||||| | ||||  || || |||| ||||||||||||||| ||||| ||||||||| ||||||||  |||    
T  46249299 tgttagaaaaagcaaaatatcattcgttatggtggttaaaagttaataacaccaattttgtgtacggttcccaaagatggtggtcggaccctttactttg 46249398  T
Q  163 tttgggtattgactga 178  Q
    ||||||||| ||||||    
T  46249399 tttgggtatcgactga 46249414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 35216345 - 35216458
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| |||||||||||||||| ||| ||||||||||| |  || ||  ||| ||||||||||||| |||| || ||||||| | ||||| |  ||||||    
T  35216345 ttagagaaagttaaatttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccctatgcattgtt 35216444  T
Q  165 tgggtattgactga 178  Q
    ||||||| ||||||    
T  35216445 tgggtatcgactga 35216458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 4964009 - 4963947
Alignment:
Q  116 acttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    |||||||||||||||||||| || ||||||||| ||||||||  |||| ||||||| ||||||    
T  4964009 acttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactga 4963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 5789937 - 5790038
Alignment:
Q  77 aaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgact 176  Q
    |||||||||| ||| |||||| | ||||  || || ||||||||||||||||| ||| | || ||||||| | ||||||||  |||| ||||||||||||    
T  5789937 aaatttcatttgttttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgtctgggtattgact 5790036  T
Q  177 ga 178  Q
    ||    
T  5790037 ga 5790038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 15275533 - 15275474
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    |||||||| |||||||| | ||||| |||| |||||||||| ||||||||||| ||||||    
T  15275533 tttgtgtatggttctcataattggtagtcggaccctttatagtgtttgggtatcgactga 15275474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 2427733 - 2427837
Alignment:
Q  74 gttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattg 173  Q
    ||||| ||| |||| |||||||||||||||| ||| || |  |||||||  |  ||| ||||||| ||||||||  |||| |||  ||||||||||||||    
T  2427733 gttaagtttaattcattgtggtggcttaaagccaataacattacttttgctttaggtactcaaaggtggtggtcagacccgttactttgtttgggtattg 2427832  T
Q  174 actga 178  Q
    |||||    
T  2427833 actga 2427837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 15792808 - 15792748
Alignment:
Q  116 acttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgact 176  Q
    |||||||||||||||||||| || ||||||| | |||| |||  |||||||||| ||||||    
T  15792808 acttttgtgtacggttctcagagatggtggttggaccccttagtttgtttgggtcttgact 15792748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 19874894 - 19874830
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgattttt 183  Q
    |||||||| |||||||| | |||||| ||| |||||||| | |||||||| || |||||||||||    
T  19874894 tttgtgtatggttctcataattggtgttcggaccctttacagtgtttgggaatcgactgattttt 19874830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 5837 - 5558
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    ||||| |||||| |||| | || |||||||| |||||||||||||||||| | ||||||||||| ||||||||| || || |||||||| ||| || |||    
T  5837 atgaatgaaacaacagactgttcaaaaacactgcaacacctattgagcagctattagataaagtaaaatttcatccggtgcggtggcttgaagccatcaa 5738  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgatttttccttataattatactttgtgacagttgt 211  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||| || | ||| ||||||||||||||||||||| |    
T  5737 aaccatttttgtgtacggttctcaaagttggtgatcgaaccctatatattgtttcggtatcgactgacttattcttgtaattatactttgtgacagtt-t 5639  T
Q  212 ttttactagggtggaacattttagtacaccttgtactaaagcgttttcatcg-cgaagttataatatttcattttcatttct 292  Q
     ||| |  || ||||||| |||||||||||||||||| | | |||| ||||| || |||||  |||||||||||| ||||||    
T  5638 gtttgccgggttggaaca-tttagtacaccttgtactgaggtgtttacatcgccgtagttaatatatttcattttgatttct 5558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 12247935 - 12248086
Alignment:
Q  12 atgaacgaaacagcagattattaaaaaacacagcaacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaa 111  Q
    |||||||||||| |||| | || || ||||| | |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||    
T  12247935 atgaacgaaacaacagactgttcaataacactgaaacacctattgagcagctcttagataaagttaaatttcattcgttgtggtggcttaaagccaataa 12248034  T
Q  112 aaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgt 163  Q
    |||||||||||||| |||||| |||||||||||||| | |||||||| ||||    
T  12248035 aaccacttttgtgttcggttcccaaagttggtggtccagccctttattttgt 12248086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 15438865 - 15438752
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| |||||||||||||||||| | ||||||||||| |  || || |||| ||||||||||| | || | || ||||||||| ||||| |   |||||    
T  15438865 ttagagaaagttaaatttcattcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtt 15438766  T
Q  165 tgggtattgactga 178  Q
    ||||||| ||||||    
T  15438765 tgggtatcgactga 15438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 15530169 - 15530056
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| |||||||||||||||||| | ||||||||||| |  || || |||| ||||||||||| | || | || ||||||||| ||||| |   |||||    
T  15530169 ttagagaaagttaaatttcattcgctttggtggcttaaggctaataacaccaattttgtgtacgatactaagagatggtggtcggaccctatgctttgtt 15530070  T
Q  165 tgggtattgactga 178  Q
    ||||||| ||||||    
T  15530069 tgggtatcgactga 15530056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 9510486 - 9510379
Alignment:
Q  71 aaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggta 170  Q
    ||||| || ||||| || || |||||||||||||  || ||  ||||||||||| | ||| |||| || ||||||||| |||||||||  ||||||||||    
T  9510486 aaagtaaagtttcactctttttggtggcttaaagctaataaggccacttttgtgcagggtactcacagatggtggtcggaccctttattatgtttgggta 9510387  T
Q  171 ttgactga 178  Q
    | ||||||    
T  9510386 tcgactga 9510379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 6244794 - 6244732
Alignment:
Q  116 acttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactga 178  Q
    ||||||||||||||| |||| || ||||||||  |||||||||  ||||||||||| ||||||    
T  6244794 acttttgtgtacggtactcacagatggtggtcagaccctttattatgtttgggtatcgactga 6244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 9492363 - 9492264
Alignment:
Q  76 taaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgac 175  Q
    |||||||||||| || ||||||||||| |  |||||   ||| ||||||||| ||||||| || ||||||||| ||||||||  ||||||| || |||||    
T  9492363 taaatttcattctttatggtggcttaaggctaacaatgtcacatttgtgtac-gttctcagagatggtggtcggaccctttagtttgtttgagtcttgac 9492265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 14497853 - 14497723
Alignment:
Q  46 aacacctattgagcagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtgg 145  Q
    |||||||||||||||  | ||||| ||||||| || |||||||||||||||| | |||  ||| |||||||||||||||||||||||||| || ||||||    
T  14497853 aacacctattgagca--tcttagaaaaagttacatatcattcgttgtggtggttaaaaaccaataaaaccacttttgtgtacggttctcagagatggtgg 14497756  T
Q  146 tcgaaccctttatattgtttgggtattgactga 178  Q
    |   |  |||||| |||| ||||||||||||||    
T  14497755 ttagattctttattttgtctgggtattgactga 14497723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 31706467 - 31706354
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||||||||||||||| |||||||| |||||||| ||||  || ||  |||| ||||||| ||| ||||| || ||||||||| ||| ||||  |||||    
T  31706467 ttagataaagttaaattccattcgttatggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtt 31706368  T
Q  165 tgggtattgactga 178  Q
    || |||| ||||||    
T  31706367 tgagtatcgactga 31706354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 33095618 - 33095576
Alignment:
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaacccttt 156  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  33095618 ccacttttgtgtacggttctcaaagatggtggtcggacccttt 33095576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 29977513 - 29977577
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgattttt 183  Q
    |||||||| |||||||| | |||||||||| || ||||||| |||||||| || |||||||||||    
T  29977513 tttgtgtatggttctcacaattggtggtcggactctttatagtgtttgggaatcgactgattttt 29977577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 6937079 - 6936975
Alignment:
Q  74 gttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattg 173  Q
    ||||||||||||||||| |||||||| | ||  || ||  ||| |||||||||||||||||| || ||| ||||  ||||| |   |||||||||||| |    
T  6937079 gttaaatttcattcgttttggtggctgagagctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcg 6936980  T
Q  174 actga 178  Q
    |||||    
T  6936979 actga 6936975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 19349587 - 19349523
Alignment:
Q  119 tttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtattgactgattttt 183  Q
    |||||||| |||||||| | |||||||||| |||||||| | ||||| || || |||||||||||    
T  19349587 tttgtgtatggttctcataattggtggtcggaccctttacagtgtttaggaatcgactgattttt 19349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 21804 - 21685
Alignment:
Q  59 cagttgttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttat 158  Q
    ||||| |||||| ||||||||||||||||  | |||||||||||||  || ||  |||| |||||| |||||||||| || ||||||||| |||| ||||    
T  21804 cagttattagatcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttat 21705  T
Q  159 attgtttgggtattgactga 178  Q
      ||||||||| ||||||||    
T  21704 tgtgtttgggtcttgactga 21685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 17618 - 17736
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    ||||| |||||||||||| ||||||| ||||||||||| |  || ||    | ||||||||||||| |||| |||||||||||| |||||||  ||||||    
T  17618 ttagagaaagttaaattttattcgttatggtggcttaaggctaagaacgttatttttgtgtacggtactcagagttggtggtcggaccctttgcattgtt 17717  T
Q  165 tgggtattgactgattttt 183  Q
    ||||||| |||||| ||||    
T  17718 tgggtatcgactgactttt 17736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 50898 - 51012
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    |||||||| | |||||||||||| || ||||||||||| |  |||||  |||| |||||||| |||||||| || ||||||||| | |||||| |||| |    
T  50898 ttagataatgctaaatttcattctttatggtggcttaaggcaaacaaggccacatttgtgtaaggttctcagagatggtggtcggatcctttacattgct 50997  T
Q  165 tgggtattgactgat 179  Q
    ||||| |||||||||    
T  50998 tgggtcttgactgat 51012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 64193 - 64307
Alignment:
Q  65 ttagataaagttaaatttcattcgttgtggtggcttaaaggcaacaaaaccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtt 164  Q
    |||||||| | |||||||||||| || ||||||||||| |  || ||  |||| ||||||||||||||||| || || |||||| | ||||||  |||||    
T  64193 ttagataatgctaaatttcattctttatggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtt 64292  T
Q  165 tgggtattgactgat 179  Q
    ||||| |||||||||    
T  64293 tgggtcttgactgat 64307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 7315 - 7258
Alignment:
Q  114 ccacttttgtgtacggttctcaaagttggtggtcgaaccctttatattgtttgggtat 171  Q
    |||| ||||||||||||| |||||| ||||||||||||||| |   ||||||||||||    
T  7315 ccacatttgtgtacggttatcaaaggtggtggtcgaaccctatgctttgtttgggtat 7258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University