View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_high_13 (Length: 404)
Name: NF10925_high_13
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 14305209 - 14304821
Alignment:
| Q |
1 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305209 |
ttttcggttgtttcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
14305110 |
T |
|
| Q |
101 |
tattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14305109 |
tattggatagcaaactttgtgattgctactttgtttgctgtttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
14305010 |
T |
|
| Q |
201 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305009 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
14304910 |
T |
|
| Q |
301 |
tgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggtttt |
389 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14304909 |
tgtagtagccacatatccatcgatttcaatcgatagaactttgagtccttatgcccattcttcatttttgtccaaaacagggtggtttt |
14304821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 14321600 - 14321206
Alignment:
| Q |
1 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14321600 |
ttttcggttgtttcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
14321501 |
T |
|
| Q |
101 |
tattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
14321500 |
tattggatagcaaactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataactgtcggtgaagaaaagttggagcttagtttgaaaa |
14321401 |
T |
|
| Q |
201 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
14321400 |
tagatgatatattctcattggttaatcttccattatctgtgttcttttttgtgatatccgtaaaagggtcatcaggtattcacgtgataagaatatccga |
14321301 |
T |
|
| Q |
301 |
tgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggtttttgatga |
395 |
Q |
| |
|
||||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| |
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|
| T |
14321300 |
tgtagtagcaacatatcggtcaatttcgaccgatagaactttgagtccttatgcttgttcgtcatttttgtctaaaacagggtggttttggatga |
14321206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 14283451 - 14283072
Alignment:
| Q |
1 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||| |||||||||| |||| ||||| |
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|
| T |
14283451 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatt |
14283352 |
T |
|
| Q |
101 |
tattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||||| |
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|
| T |
14283351 |
tattgggcagcaaactttgtgattgcttctttgttcactgcttcagctattgttcgaatgataaccgttggtgaaacaaagttggagcttaatttgagaa |
14283252 |
T |
|
| Q |
201 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14283251 |
tagatgacatattctctttggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
14283152 |
T |
|
| Q |
301 |
tgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacag |
380 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14283151 |
tgtagtagcaacatatccatcagtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacag |
14283072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 25886282 - 25885888
Alignment:
| Q |
1 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
100 |
Q |
| |
|
||||||||||||||||||| || |||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886282 |
ttttcggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
25886183 |
T |
|
| Q |
101 |
tattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| || | |||| || |||||||| ||||||||||||| |
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|
| T |
25886182 |
tattggatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaa |
25886083 |
T |
|
| Q |
201 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||| |
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|
| T |
25886082 |
tagatgacatattctcattggttaatcttccattatctttgttcttttttgtcatatccattagagggtcatcagggattcatgtgataagaatatccga |
25885983 |
T |
|
| Q |
301 |
tgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggtttttgatga |
395 |
Q |
| |
|
||||||||| |||||| ||||| || ||| ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
25885982 |
tgtagtagcgacatatacatcggttccaactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatga |
25885888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 44350126 - 44349732
Alignment:
| Q |
1 |
ttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatc |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44350126 |
ttttcggttgtttcaagctgtagtcaacatagtaatagtgattctaatgttacacgaggaaaagttcaaatcttccaaacaccctttatccctaagaatc |
44350027 |
T |
|
| Q |
101 |
tattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| | | |||| ||||| |||| ||||||||||||| |
|
|
| T |
44350026 |
tattggatagtaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaataccagtgaggaaaaaatggaacttagtttgagaa |
44349927 |
T |
|
| Q |
201 |
tagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatatccga |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
44349926 |
tagatgatatattctcattggttaatcttccattatctgcgttcttttttgtcatatccattagagggtcatcagggattcttgtgataagaatatccga |
44349827 |
T |
|
| Q |
301 |
tgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggtttttgatga |
395 |
Q |
| |
|
||||||||| |||||| |||| || | | ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
44349826 |
tgtagtagcgacatatacatcagttccgactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatga |
44349732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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