View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10925_high_18 (Length: 288)
Name: NF10925_high_18
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 29023459 - 29023755
Alignment:
| Q |
6 |
aattgccaaatttcatttccagtttcagaatcaataagaacgtgacgtagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29023459 |
aattgccaaatttcatttccagtttcagaatcaataagaacgtgacatagattgcttccttttaattacaacaaacataaataaaagaaaattgcatgca |
29023558 |
T |
|
| Q |
106 |
ataatacacataacataacacagat--------------taaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca |
191 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29023559 |
ataatacacataacataacacatataacacatataagactaaacaattatacagaacaaaagtaaccatatagttactgaataataaataatattgaaca |
29023658 |
T |
|
| Q |
192 |
ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacctatactagatgtctgatcagggattgattctggct |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29023659 |
ttcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacctatagtagatgtctgatcagggattgattctggct |
29023755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University