View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_high_2 (Length: 679)
Name: NF10925_high_2
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 19 - 677
Target Start/End: Complemental strand, 29787925 - 29787267
Alignment:
| Q |
19 |
aagaagctatcaaaagaataaaattttacattcttcggtattttccagtggctattccagtgatgagaactcatttgacaaatcatatcatgatttggaa |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787925 |
aagaagctaccaaaagaataaaattttacattcttcggtattttccagtggctattccagtgatgagaactcatttgacaaatcatatcatgatttggaa |
29787826 |
T |
|
| Q |
119 |
gccatgtcaccaatgccaaggcattcttgggattgcatccatgtatgtggcagtccttattctacacaatctttaggacgtacaacgtgttctcccgagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787825 |
gccatgtcaccaatgccaaggcattcttgggattgcatccatgtatgtggcagtccttattctacacaatctttaggacgtacaacgtgttctcccgagt |
29787726 |
T |
|
| Q |
219 |
cctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggcatctaacggaaaaggccatcaagaacaaaggcatgtgtcgagaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787725 |
cctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggcatctaacggaaaaggccatcaagaacaaaggcatgtgtcgagaaa |
29787626 |
T |
|
| Q |
319 |
ctctactttgggtgaaatgctttctctttcccttgtaaagaaatctgcaacatctgtggttgagagtactaataaacaccaagaagaacaaagaaaatct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29787625 |
ctctactttgggtgaaatgctttctctttcccttgtaaagaaatctgcaacatctgtgattgagagtactaataaacaccaagaagaagaaagaaaatct |
29787526 |
T |
|
| Q |
419 |
gtttcttgcactgaatctttcaatgaaaaaattagcattgatgattctcctcaaaacgattgtgggttgaatcctgaccctgcatcttcagcagtctatg |
518 |
Q |
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| T |
29787525 |
gtttcttgcactgaatctttcaatgaaaaaattagcattaatgattctcctcaaaacgattgtgggttgaatcctgaccctgcatcttcaacagtctatg |
29787426 |
T |
|
| Q |
519 |
aacctagcctcggcattgatgccgttgacaaagaacatggctccaaggtggtggcaaagtccaagagtaagaaatcatcatttaaagggaaagttgcaag |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787425 |
aacctagcctcggcattgatgccgttgacaaagaacatggctccaaggtggtggcaaagtccaagagtaagaaatcatcatttaaagggaaagttgcaag |
29787326 |
T |
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| Q |
619 |
tttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcactcga |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29787325 |
tttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcattcga |
29787267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 661
Target Start/End: Original strand, 39873422 - 39873524
Alignment:
| Q |
559 |
ctccaaggtggtggcaaagtccaagagtaagaaatcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaa |
658 |
Q |
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|||||||| | || ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||| || ||| || |||| || | ||||| |
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| T |
39873422 |
ctccaaggagctgacaaagtcaaagagtatgaaatcatcatttaaagggaaagttgcgagtttcttattctcaaggaataagaaatcaatcagggaaaaa |
39873521 |
T |
|
| Q |
659 |
tct |
661 |
Q |
| |
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||| |
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| T |
39873522 |
tct |
39873524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 348
Target Start/End: Original strand, 39873063 - 39873202
Alignment:
| Q |
206 |
tgttctcccgagtcctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggcatctaacggaaaaggccatcaagaacaaaggc |
305 |
Q |
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|||||||| ||||| || || |||| |||||| |||||||||||||||||||||||| | | ||||||||||| || || |||||||||||| | |
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| T |
39873063 |
tgttctcctgagtcgtcagtatgcagagaggccaagaaacgactttctgaaagatgggccatgatggcatctaa---gaagggttttcaagaacaaagac |
39873159 |
T |
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| Q |
306 |
atgtgtcgagaaactctactttgggtgaaatgctttctctttc |
348 |
Q |
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|| || ||||| |||||||||||| || |||||| ||||||| |
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| T |
39873160 |
atatgcggagaagctctactttgggcgagatgcttgctctttc |
39873202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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