View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_high_21 (Length: 255)
Name: NF10925_high_21
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25873384 - 25873148
Alignment:
| Q |
1 |
tgttatcaacaaggatcaagtcatgaacctccttcttaaacttcttcaacgtcccatacatttgtattttcttttgcatagaatatctatttcctacgtt |
100 |
Q |
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| T |
25873384 |
tgttatcaatagggatcaagtcatgaacctccttcttaaacttcttcaacgtcccatacatttgtatttgtttttgcatagaatatctatttcctacgtt |
25873285 |
T |
|
| Q |
101 |
aagcattgaatttcacgtctcaattaagaggagtcgtgaaaaggatagactcacaatcttgatcaaatcctttttcaaatcatgccgcagctgcgcaagc |
200 |
Q |
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| T |
25873284 |
aagcattgaatttcacgtctcaattaagaggagtcgtgaaaaggatagactcacaatcttgatcaaattctttttcaaatcatgccgcagctgcgcaagc |
25873185 |
T |
|
| Q |
201 |
tcttcccaggtgtcataaatgacctacgaataggaag |
237 |
Q |
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| T |
25873184 |
tcttcccacgtgtcataaatgacctacgaataggaag |
25873148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 18971509 - 18971367
Alignment:
| Q |
95 |
tacgttaagcattgaatttcacgtctcaattaagaggagtcgtgaaaaggatagactcacaatcttgatcaaatcctttttcaaatcatgccgcagctgc |
194 |
Q |
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| T |
18971509 |
tacgtcaagcattgtatttcatgtctcaattaagaggagtcatgaaaagaacaggctccgaatctcgatcaattcctttttcaaatcctgcggcagctgc |
18971410 |
T |
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| Q |
195 |
gcaagctcttcccaggtgtcataaatgacctacgaataggaag |
237 |
Q |
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| T |
18971409 |
acgagctcttcccgcgtgtcataaatgacctacgaataggaag |
18971367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 42601327 - 42601279
Alignment:
| Q |
95 |
tacgttaagcattgaatttcacgtctcaattaagaggagtcgtgaaaag |
143 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
42601327 |
tacgtcaagcattgaatttcatgtctcaattaagaggagtcatgaaaag |
42601279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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