View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_high_3 (Length: 656)

Name: NF10925_high_3
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_high_3
NF10925_high_3
[»] chr7 (23 HSPs)
chr7 (1-639)||(36463935-36464569)
chr7 (1-362)||(3934792-3935139)
chr7 (1-361)||(3932553-3932899)
chr7 (1-362)||(8414489-8414836)
chr7 (32-361)||(19788938-19789272)
chr7 (32-359)||(19786632-19786964)
chr7 (1-361)||(8733495-8733840)
chr7 (2-361)||(3052039-3052387)
chr7 (163-363)||(8731174-8731359)
chr7 (275-361)||(18395411-18395497)
chr7 (275-361)||(42678571-42678657)
chr7 (275-361)||(16496953-16497039)
chr7 (1-239)||(42678669-42678924)
chr7 (275-361)||(16535135-16535221)
chr7 (275-361)||(16630441-16630527)
chr7 (163-273)||(28610315-28610424)
chr7 (275-364)||(21769066-21769155)
chr7 (185-237)||(18395336-18395388)
chr7 (115-359)||(19093846-19094092)
chr7 (307-361)||(42680808-42680862)
chr7 (1-77)||(16535260-16535336)
chr7 (1-77)||(16630326-16630402)
chr7 (7-77)||(16497078-16497148)
[»] chr8 (6 HSPs)
chr8 (1-361)||(21268120-21268475)
chr8 (1-361)||(36379465-36379813)
chr8 (1-361)||(4876830-4877176)
chr8 (1-361)||(4879158-4879504)
chr8 (1-363)||(24519151-24519500)
chr8 (1-362)||(36377180-36377528)
[»] chr4 (13 HSPs)
chr4 (1-361)||(45162017-45162364)
chr4 (1-362)||(42468438-42468785)
chr4 (1-359)||(45166909-45167254)
chr4 (1-361)||(42470768-42471114)
chr4 (23-240)||(50855868-50856085)
chr4 (90-361)||(19429076-19429334)
chr4 (163-361)||(13774151-13774336)
chr4 (35-237)||(8739264-8739467)
chr4 (163-358)||(13776449-13776630)
chr4 (275-361)||(50855771-50855857)
chr4 (99-225)||(43179575-43179710)
chr4 (104-238)||(24908156-24908298)
chr4 (300-361)||(8739501-8739562)
[»] chr1 (13 HSPs)
chr1 (1-361)||(29833076-29833421)
chr1 (1-361)||(734579-734924)
chr1 (1-361)||(2403835-2404173)
chr1 (163-361)||(10909108-10909292)
chr1 (163-362)||(10911352-10911536)
chr1 (32-361)||(8933549-8933872)
chr1 (163-361)||(13011698-13011881)
chr1 (143-240)||(29833852-29833949)
chr1 (275-361)||(29833960-29834046)
chr1 (160-361)||(2409957-2410136)
chr1 (1-85)||(2416660-2416745)
chr1 (86-245)||(18353733-18353894)
chr1 (2-73)||(419213-419284)
[»] chr2 (13 HSPs)
chr2 (1-361)||(31486721-31487069)
chr2 (1-363)||(31489005-31489355)
chr2 (1-250)||(29801813-29802067)
chr2 (163-361)||(42275556-42275739)
chr2 (163-361)||(42277782-42277965)
chr2 (7-362)||(23859825-23860188)
chr2 (1-243)||(34576694-34576959)
chr2 (275-361)||(5164151-5164237)
chr2 (275-355)||(8995076-8995156)
chr2 (275-355)||(15730013-15730093)
chr2 (299-361)||(39816089-39816151)
chr2 (300-353)||(34576612-34576665)
chr2 (198-239)||(8995169-8995210)
[»] chr5 (19 HSPs)
chr5 (1-361)||(11852175-11852511)
chr5 (1-240)||(23164347-23164586)
chr5 (1-239)||(37207710-37207948)
chr5 (1-240)||(11850014-11850253)
chr5 (1-240)||(22600750-22600989)
chr5 (96-239)||(37215396-37215539)
chr5 (1-239)||(1779316-1779571)
chr5 (275-362)||(11849916-11850003)
chr5 (275-361)||(23164254-23164340)
chr5 (275-362)||(22601000-22601088)
chr5 (275-361)||(37215551-37215638)
chr5 (275-361)||(1779222-1779303)
chr5 (283-361)||(21743719-21743797)
chr5 (290-361)||(37207998-37208070)
chr5 (163-250)||(21743622-21743709)
chr5 (300-361)||(15469197-15469258)
chr5 (1-202)||(1779587-1779805)
chr5 (197-237)||(1779181-1779221)
chr5 (85-165)||(15469006-15469086)
[»] scaffold0599 (1 HSPs)
scaffold0599 (126-361)||(1579-1801)
[»] chr3 (5 HSPs)
chr3 (163-361)||(4530835-4531020)
chr3 (169-362)||(4533138-4533318)
chr3 (1-237)||(18966221-18966470)
chr3 (88-163)||(1701104-1701179)
chr3 (106-162)||(8535522-8535578)
[»] scaffold0050 (4 HSPs)
scaffold0050 (84-250)||(29261-29426)
scaffold0050 (84-250)||(31574-31741)
scaffold0050 (300-361)||(29453-29514)
scaffold0050 (300-361)||(31768-31829)
[»] scaffold0008 (1 HSPs)
scaffold0008 (275-361)||(88445-88531)
[»] scaffold1361 (1 HSPs)
scaffold1361 (275-361)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (283-361)||(3707-3785)
[»] chr6 (2 HSPs)
chr6 (23-229)||(21199149-21199374)
chr6 (300-359)||(20642300-20642359)
[»] scaffold0312 (1 HSPs)
scaffold0312 (2-73)||(11287-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (300-364)||(64082-64144)
scaffold0045 (300-364)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 36464569 - 36463935
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36464569 ggaagtctctagaacactaaataataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 36464470  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464469 ttgacttttctagatccttctagttttatgtactagagtatccatatctccagacttttctttgtttctagatatttctagtttataatggagagccttc 36464370  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  36464369 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagc----attgaatcattcaagtaatataactt 36464274  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaatgattcctcgaaaaatgctttgtgctacattaggatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36464273 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaacgattcctcgaaaaatgctttgtgctacattaggatg 36464174  T
Q  401 atacttgnnnnnnnggaatccaaaccagacacacagaacgtgtatacgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaa 500  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464173 atacttgtttttttggaatccaaaccagacacacagaacgtgtatacgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaa 36464074  T
Q  501 taatgaattttattttggtaagtgactacgattccattggagtttttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtt 600  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464073 taatgaattttattttggaaggtgactacgattccattggagtttttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtt 36463974  T
Q  601 tctttccctgtctctaaactcctttaacatagacatgat 639  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36463973 tctttccctgtctctaaactcctttaacatagacatgat 36463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 3934792 - 3935139
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| || |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  3934792 ggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtc 3934891  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3934892 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 3934991  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||| ||||||||||||||||||||| |||||||||||          |||||||||||||| ||||||    ||||||||||||||||||||||||||    
T  3934992 ctagaatagtataaataaggctcaccatctagtgttttg----------gatactcaagcataatcaagc----attgaatcattcaagtaatataactt 3935077  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3935078 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 3935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 3932553 - 3932899
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| || |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  3932553 ggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtc 3932652  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3932653 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 3932752  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||| ||||||||||||||||||||| |||||||||||          |||||||||||||| ||||||    ||||||||||||||||||||||||||    
T  3932753 ctagaatagtataaataaggctcaccatctagtgttttg----------gatactcaagcataatcaagc----attgaatcattcaagtaatataactt 3932838  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3932839 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 3932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 8414836 - 8414489
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  8414836 ggaagtatctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaaactactagacactactaaataagcactagggaagtc 8414737  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    |||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  8414736 ttgacttttctagatc-ttctagttttatatactaaaatatccatatctctagacttttctttgtttctagatttttctagtttgtaatggagagccttc 8414638  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||| ||||||    |||||||||||||| |||||||||||    
T  8414637 ctagagtagtataaataaggctcaccacctagtgttttggcatact---------caagcatattcaagc----attgaatcattcaaataatataactt 8414551  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  8414550 ttctttgagaatattagagtgtttttctattttctctacctttccttttgtccctgagccaa 8414489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 32 - 361
Target Start/End: Original strand, 19788938 - 19789272
Alignment:
Q  32 gaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtcttgacttttctagatccttctagttttatgt 131  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  19788938 gaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgt 19789037  T
Q  132 actagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccaccta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  19789038 actagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactagagtagtataaataaggctcaccaccta 19789137  T
Q  232 gtgttttggcatactcaagatactcaagcatagtcaag-----cattaattgaatcattcaagtaatataactttt-ctttgagaatattagagtgtttc 325  Q
    ||||||||||||| |||||| | ||||| ||| |||||     ||   ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  19789138 gtgttttggcatattcaagacattcaag-atactcaagataatcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttc 19789236  T
Q  326 tcaattttctctacctttccttttgtccctgagcca 361  Q
    || |||||||||||||||||||||||||||||||||    
T  19789237 tctattttctctacctttccttttgtccctgagcca 19789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 32 - 359
Target Start/End: Original strand, 19786632 - 19786964
Alignment:
Q  32 gaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtcttgacttttctagatccttctagttttatgt 131  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  19786632 gaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgt 19786731  T
Q  132 actagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccaccta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19786732 actagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccaccta 19786831  T
Q  232 gtgttttggcatactcaagatactcaagcatagtcaag-----cattaattgaatcattcaagtaatataactttt-ctttgagaatattagagtgtttc 325  Q
    ||||||||||||| |||||| | ||||| ||| |||||     ||   ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  19786832 gtgttttggcatattcaagacattcaag-atactcaagataatcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttc 19786930  T
Q  326 tcaattttctctacctttccttttgtccctgagc 359  Q
    || |||||||||||||||||||||||||||||||    
T  19786931 tctattttctctacctttccttttgtccctgagc 19786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 8733840 - 8733495
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||    
T  8733840 ggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactaggg---tc 8733744  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  8733743 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaaggagagccttc 8733644  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataa-ct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||    |||||| ||||||| |||||||| ||    
T  8733643 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaaga---------atcatcaagc----attgaagcattcaaataatataatct 8733557  T
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||    
T  8733556 tttctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgagcca 8733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 3052039 - 3052387
Alignment:
Q  2 gaagtctctagaacactaaataataaaatagaagtctctagaatactag----ggaataataaggatgctactagacactactaaataagcactagggaa 97  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||||||      ||||||||||| ||||||||||||||||||||||||| |||||||    
T  3052039 gaagtctctataacactaaagaataatatagaagtctctagaatactagataataaataataaggaagctactagacactactaaataagcattagggaa 3052138  T
Q  98 gtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagcc 197  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3052139 gtcttaacttttctagatccttctagttttatgtactagaatatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagcc 3052238  T
Q  198 ttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||         | ||||||||| ||| ||||||    |||||| ||||||| ||||||||    
T  3052239 ttcctagagtagtataaataaggctcaccacctagtgttttg---------atatactcaagtatactcaagc----attgaagcattcaaataatataa 3052325  T
Q  298 cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
      |||||||||||||| ||||  ||||||  |||||||||||| |||||||||||||| |||||    
T  3052326 actttctttgagaataataga--gtttctttattttctctaccattccttttgtccctcagcca 3052387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 163 - 363
Target Start/End: Complemental strand, 8731359 - 8731174
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |||| | | ||           |     
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacatttaa-----------ag 8731271  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    | |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  8731270 aatcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaa 8731175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 18395411 - 18395497
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18395411 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagcca 18395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 42678657 - 42678571
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  42678657 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgagcca 42678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 16497039 - 16496953
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  16497039 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42678924 - 42678669
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact--actaaataa------gcacta 92  Q
    |||||| ||||||| |||||| ||||| || |||||||||| ||||||| ||||||||||||| |||||||||||||  |||||||||      ||||||    
T  42678924 ggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcacta 42678825  T
Q  93 gggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtt 183  Q
    || || |||| |  ||||||||||||||||||  ||||  ||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||    
T  42678824 ggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtt 42678725  T
Q  184 tataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg 239  Q
    | ||||| ||| |||||| |  |||||||||||||||||||||||| |||||||||    
T  42678724 tgtaatgtagaaccttcccaaggtagtataaataaggctcaccaccaagtgttttg 42678669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 16535221 - 16535135
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16535221 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 16630441 - 16630527
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16630441 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 28610424 - 28610315
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||| | || ||||||| ||||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccaccaagtgtttaggcacattc-agatactgaagcat 28610326  T
Q  263 agtcaagcatt 273  Q
    | |||||||||    
T  28610325 actcaagcatt 28610315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 21769155 - 21769066
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 364  Q
    |||||| ||||||| |||||  |  ||||||||||||||||| || ||||||| ||||||||||||||||||||  ||||||||| ||||    
T  21769155 attgaaacattcaaataataacaactttctttgagaatattaaagagtttctctattttctctacctttcctttcatccctgagcaaaat 21769066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 18395336 - 18395388
Alignment:
Q  185 ataatggagagccttcctagagtagtataaataaggctcaccacctagtgttt 237  Q
    |||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  18395336 ataatgtagagccttcctagagtagtataaataaggctcaccactaagtgttt 18395388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 359
Target Start/End: Complemental strand, 19094092 - 19093846
Alignment:
Q  115 tccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttataatggagagc----cttcc 201  Q
    |||||||||  ||||  |||||||||||||| |||||||||||||||||||         || |||||||||||||||| ||||| ||||     ||| |    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgtaatcgatatttttagatatttctagtttgtaatgtagagtacgtctttc 19093993  T
Q  202 tagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttt 301  Q
    ||||||||||||||||||| || ||||| ||||||  |||||||||||| || ||||  ||  |||| |||| |   ||| ||  ||   ||||||  ||    
T  19093992 tagagtagtataaataaggttcgccaccaagtgttcaggcatactcaag-tattcaaaaat--tcaaacattca---aataatataa---atataaactt 19093902  T
Q  302 tctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 359  Q
    |||||||||||||||||| ||||||  ||||||||||||| |||||||| ||||||||    
T  19093901 tctttgagaatattagagagtttct--attttctctacctctccttttgaccctgagc 19093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 42680808 - 42680862
Alignment:
Q  307 gagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  42680808 gagaatattagagtgtttctctattttctctacctttcattttgttcctcagcca 42680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16535336 - 16535260
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 77  Q
    ||||| |||||||| | |||| |||||  | |||||||||||||||||| |||||||||| || |||||||||||||    
T  16535336 ggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacact 16535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16630326 - 16630402
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 77  Q
    ||||| |||||||| | |||| |||||  | |||||||||||||||||| |||||||||| || |||||||||||||    
T  16630326 ggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacact 16630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 16497148 - 16497078
Alignment:
Q  7 ctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 77  Q
    |||||||| | |||| |||||  | ||||| |||||||||||| ||||||||||||| |||||||||||||    
T  16497148 ctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaagctactagacact 16497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 21268475 - 21268120
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  21268475 ggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaa-actagggaagtc 21268377  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21268376 ttgacttttctagatccttctagttttatgtactaaagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 21268277  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| || | ||||||||| ||| ||||||    ||||||| ||||||||||||||||||    
T  21268276 ctagagtagtataaataaggctcactacctagtgtttaggcataatccaaatactcaag-ataatcaagc----attgaatgattcaagtaatataactt 21268182  T
Q  301 tt-ctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  21268181 ttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 21268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 36379813 - 36379465
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36379813 ggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 36379714  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  36379713 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttc 36379614  T
Q  201 ctagagtagtataaataaggctcaccacct-agtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataact 299  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||              ||||||| |||||||||||||||||    
T  36379613 ctagagtagtataaataaggctcaccacctgggtgttttggcatactcaagataatcaagc--------------attgaatgattcaagtaatataact 36379528  T
Q  300 ttt-ctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36379527 tttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 36379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 4876830 - 4877176
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  4876830 ggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactagggaagtc 4876929  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4876930 ttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 4877029  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||              ||||||| ||||||||||||||||||    
T  4877030 ctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagc--------------attgaatgattcaagtaatataactt 4877115  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4877116 ttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 4879158 - 4879504
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  4879158 ggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactagggaagtc 4879257  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4879258 ttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 4879357  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||              ||||||| ||||||||||||||||||    
T  4879358 ctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagc--------------attgaatgattcaagtaatataactt 4879443  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4879444 ttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 24519500 - 24519151
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  24519500 ggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcactagggaagtc 24519401  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519400 ttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 24519301  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||         |||| ||||||| ||||||    ||||||||||||||||||||||||||    
T  24519300 ctagagtagtataaataaggctcaccatctagtgttttggca---------tactgaagcataatcaagc----attgaatcattcaagtaatataactt 24519214  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 363  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24519213 ttcttagagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaaa 24519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 36377528 - 36377180
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36377528 ggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 36377429  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||| ||| |||||||||||||||    
T  36377428 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctgaacttttctttgttttcagatatttctactttgtaatggagagccttc 36377329  T
Q  201 ctagagtagtataaataaggctcaccacct-agtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataact 299  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||              ||||||| |||||||||||||||||    
T  36377328 ctagagtagtataaataaggctcaccacctaagtgttttggcatactcaaaataatcaagc--------------attgaatgattcaagtaatataact 36377243  T
Q  300 ttt-ctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  36377242 tttcctttgagaatattagagtgtttctctattttctctacctttcc-tttgtccttgagccaa 36377180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 45162017 - 45162364
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  45162017 ggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataagaaagctactagacactactaaataagcactagggaagtc 45162116  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  45162117 tttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttc 45162216  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||| |||||||||||||||||||||||||||||||||||         ||||||||||||  |||| |    ||||||||||||||||||||||||||    
T  45162217 ctagaatagtataaataaggctcaccacctagtgttttggc---------atactcaagcatcatcaaac----attgaatcattcaagtaatataactt 45162303  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45162304 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 45162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 42468785 - 42468438
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  42468785 ggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcactagggaagtc 42468686  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42468685 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 42468586  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||| |||||||||||          |||||| ||||||  ||||||    |||||| |||||||||||||||||||    
T  42468585 ctagagtagtataaataaggctcaccatctagtgttttg----------gatactgaagcatcatcaagc----attgaagcattcaagtaatataactt 42468500  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42468499 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 42468438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 45166909 - 45167254
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45166909 ggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 45167008  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  45167009 tttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttc 45167108  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||| |||||||||||||||||||||||||||||||||||         ||||||||||||  |||| |    |||||||||||||| |||||||||||    
T  45167109 ctagaatagtataaataaggctcaccacctagtgttttggc---------atactcaagcatcatcaaac----attgaatcattcaaataatataactt 45167195  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 359  Q
    || ||| |||||||||||||||||||| ||||||  || |||||||||||||| |||||    
T  45167196 ttttttaagaatattagagtgtttctctattttcggtaactttccttttgtccatgagc 45167254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 42471114 - 42470768
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  42471114 ggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcactagggaagtc 42471015  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42471014 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 42470915  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||| |||||||||||          |||||| ||||||  ||||||    |||||| |||||||||||||||||||    
T  42470914 ctagagtagtataaataaggctcaccatctagtgttttg----------gatactgaagcatcatcaagc----attgaagcattcaagtaatataactt 42470829  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42470828 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 50856085 - 50855868
Alignment:
Q  23 aataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtcttgacttttctagatccttcta 122  Q
    ||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50856085 aataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttcta 50855986  T
Q  123 gttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggct 222  Q
    |  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |    
T  50855985 ggcttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggtt 50855886  T
Q  223 caccacctagtgttttgg 240  Q
    ||||||||||||||||||    
T  50855885 caccacctagtgttttgg 50855868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 90 - 361
Target Start/End: Complemental strand, 19429334 - 19429076
Alignment:
Q  90 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  19429334 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaat 19429235  T
Q  190 ggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaag 289  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||| |  ||| |||||||||||||||              |||||||||||||||    
T  19429234 ggagagcctacctagagtagtataaataaggctcaccaccaagtgtttagatatattcaagatactcaagc--------------attgaatcattcaag 19429149  T
Q  290 taatata-acttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  19429148 taatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 19429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 13774151 - 13774336
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaag---------cat 13774241  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
      |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13774242 catcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 13774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 8739264 - 8739467
Alignment:
Q  35 gtctctagaatactagggaataataaggatgctactagacactactaaa--taagcactagggaagtcttgacttttctagatccttctagttttatgta 132  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||||||  || ||||||||||| |||| |  ||||||||||||||||||  |||| |    
T  8739264 gtctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaa 8739362  T
Q  133 ctagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctag 232  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||    
T  8739363 ctagagcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctagagttgtataaacaaggcttaccaccaag 8739462  T
Q  233 tgttt 237  Q
    |||||    
T  8739463 tgttt 8739467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 163 - 358
Target Start/End: Original strand, 13776449 - 13776630
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |  ||||||| |||| | ||||           |     
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcaccgctaagtgtttaggcacattcaa-----------ag 13776537  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgag 358  Q
    | |||||||||    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13776538 aatcaagcatt----gaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 50855857 - 50855771
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50855857 attgaatcattcaagtaatataacttttcctcgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 50855771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 43179575 - 43179710
Alignment:
Q  99 tcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt---------tgtttctagatatttctagtttataat 189  Q
    |||| |||||| | ||||||||||||  |||| |||||||||||||| |||||| |||||||||         ||||| |||||||||||||||| ||||    
T  43179575 tcttaacttttttggatccttctagtcatatgaactagagtatccatgtctctatacttttctttgtaatcaatgtttgtagatatttctagtttgtaat 43179674  T
Q  190 ggagagccttcctagagtagtataaataaggctcac 225  Q
    | ||||  || |||||||||||||||| ||||||||    
T  43179675 gcagagtttttctagagtagtataaattaggctcac 43179710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 24908298 - 24908156
Alignment:
Q  104 acttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt--------tgtttctagatatttctagtttataatggagag 195  Q
    |||||||||| || || ||||  |||| |||| ||||||||||||| ||||||||||||        || ||||| || |||||| ||| ||| |  ||     
T  24908298 acttttctaggtctttttagtcatatgaactaaagtatccatatctttagacttttcttgtaataaatgcttctacatctttctactttgtaacgtggaa 24908199  T
Q  196 ccttcctagagtagtataaataaggctcaccacctagtgtttt 238  Q
    |||||||||||||||||||||| || |||||||| ||||||||    
T  24908198 ccttcctagagtagtataaatagggttcaccaccaagtgtttt 24908156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 8739501 - 8739562
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||| ||||||| ||||||| ||||||  |||||||||  |||||||||| |||||||||||    
T  8739501 tttccttgagaacattagagagtttctttattttctctttctttccttttatccctgagcca 8739562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 29833421 - 29833076
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29833421 ggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 29833322  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29833321 ttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 29833222  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||| ||  ||||||              ||||||||||||||||||||||||||    
T  29833221 ctagagtagtataaataaggctcaccacctagtgttttggcacattcaa-atcatcaagc--------------attgaatcattcaagtaatataactt 29833137  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  29833136 ttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 29833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 734924 - 734579
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  734924 ggaagtctttagaagactaaagaataatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaataagcactagggaagtc 734825  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  734824 ttaacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttc 734725  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttgg-catactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataact 299  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||              ||||||| |||||||||||||||||    
T  734724 ctagaatagtataaataaggctcaccacctagtgttttggtcatactcaagataatcaagc--------------attgaatgattcaagtaatataact 734639  T
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  734638 tttccttgagaatatt--agtgtttctctattttctctacctttccttttgtccctgagcca 734579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 2404173 - 2403835
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2404173 ggaaatctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtc 2404074  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2404073 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttc 2403974  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataa-ct 299  Q
    |||||||||||||||||||| ||||||| |||||||||||||   |||      |||||||||              ||| ||||||| ||||||||  |    
T  2403973 ctagagtagtataaataaggttcaccacttagtgttttggca---tca------tcaagcata--------------gaaacattcaaataatataatat 2403897  T
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2403896 tttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgagcca 2403835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 10909108 - 10909292
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |||| | ||||           |     
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-----------ag 10909196  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    | |||||||||    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10909197 aatcaagcatt----gaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 10909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 163 - 362
Target Start/End: Original strand, 10911352 - 10911536
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||  ||||||| |||| | ||||           |     
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-----------ag 10911440  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    | |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10911441 aatcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaa 10911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 8933872 - 8933549
Alignment:
Q  32 gaagtctctagaatactagggaataataaggatgctactagacact--actaaataa------gcactagggaagtcttgacttttctagatccttctag 123  Q
    |||||||||| ||||||| ||||||||||||| |||| ||||||||  |||||||||      |||||||| || |||| |  |||||||||||||||||    
T  8933872 gaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaagcactaggaaaatcttaatgtttctagatccttctag 8933773  T
Q  124 ttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttataatggagagccttcctagagtagtataa 214  Q
    |  |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  8933772 tcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcctagagtagtataa 8933673  T
Q  215 ataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatat 314  Q
    ||||||||||||||  |||||||||       ||||            | |||||||||    ||||||||||||||||||||||||||||||| |||||    
T  8933672 ataaggctcaccactaagtgttttg-------caag------------aatcaagcatt----gaatcattcaagtaatataacttttctttgaaaatat 8933596  T
Q  315 tagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  8933595 tagagtgtttctctattttctctaccttttcttttgtccctgagcca 8933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 13011698 - 13011881
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| | || | ||||           |     
T  13011698 tgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattcaa-----------ag 13011786  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    | |||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13011787 aatcaagcatt----gaatcattcaaataatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgttcctgagcca 13011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 29833852 - 29833949
Alignment:
Q  143 catatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgg 240  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29833852 catatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcactacctagtgttttgg 29833949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 29833960 - 29834046
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29833960 attgaatccttcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 29834046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 160 - 361
Target Start/End: Complemental strand, 2410136 - 2409957
Alignment:
Q  160 ctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaag 259  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||      |||||    
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggca---tca------tcaag 2410046  T
Q  260 catagtcaagcattaattgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgag 358  Q
    ||||              ||| ||||||| ||||||||  |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||    
T  2410045 cata--------------gaaacattcaaataatataatattttctttgagaatattatagagtttctctattttctctacctttccttttgtccctgag 2409960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2416745 - 2416660
Alignment:
Q  1 ggaagtctct-agaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaata 85  Q
    |||||||||| |||| |||| | ||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  2416745 ggaagtctctcagaagactacagaataatatagaactctctagaatactagggaataataaggaagctactagatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 18353733 - 18353894
Alignment:
Q  86 agcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttt--tctttgtttctagatatttctagtt 183  Q
    ||||||||| || ||||  ||||||||||||||||||||  |||| |||||||||||||| ||| |    | |  ||  ||||||||||| |||||| ||    
T  18353733 agcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtcttttatttctaatcaatgtttctagatctttctattt 18353832  T
Q  184 tataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatac 245  Q
    | |||||  |||| || |||||||||||||| || |||||||| || |||||||||||||||    
T  18353833 tgtaatgtggagcattactagagtagtataattagggctcacctccaagtgttttggcatac 18353894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 419284 - 419213
Alignment:
Q  2 gaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactaga 73  Q
    |||||||||||||||||||| ||||| || |||||||||| |||  ||  |||||||||||| |||||||||    
T  419284 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 31486721 - 31487069
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31486721 ggaagcctctagaagactagagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 31486820  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  31486821 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttc 31486920  T
Q  201 ctagagtagtataaataaggctcaccacct-agtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataact 299  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||              ||||||| |||||||||||||||||    
T  31486921 ctagagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagc--------------attgaatgattcaagtaatataact 31487006  T
Q  300 ttt-ctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31487007 tttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 31487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 31489005 - 31489355
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    ||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31489005 ggaagtctctaaaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 31489104  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    ||  ||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  31489105 ttagcttttctagatccttctaagcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttc 31489204  T
Q  201 ctagagtagtataaataaggctcaccacct-agtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataact 299  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||              ||||||| |||||||||||||||||    
T  31489205 ctaaagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagc--------------attgaatgattcaagtaatataact 31489290  T
Q  300 ttt-ctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 363  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  31489291 tttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagccaaa 31489355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 29801813 - 29802067
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggat----gctactagacactactaaa--taagcactagg 94  Q
    ||||||||||||||||| ||| ||||| |  ||||| ||||||||||||  ||||||||||||     ||||||||||||| |||||  |||||||| |     
T  29801813 ggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaatctagctactagacact-ctaaaattaagcactgga 29801911  T
Q  95 gaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggaga 194  Q
     || |||| |  |||||| |||||||||||  |||| |||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||    
T  29801912 aaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttgtagatatttctagtttgtaatgggga 29802011  T
Q  195 gccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaag 250  Q
    | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  29802012 gtcttcctagagtagtataaataaggctcaccaccaagtgtttaggcatagtcaag 29802067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 163 - 361
Target Start/End: Complemental strand, 42275739 - 42275556
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |||| | ||||           |     
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-----------ag 42275651  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    | ||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42275650 aatcaagtatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 163 - 361
Target Start/End: Complemental strand, 42277965 - 42277782
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||  ||||||| |||| | ||||           |     
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaa-----------ag 42277877  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    | |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42277876 aatcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 362
Target Start/End: Original strand, 23859825 - 23860188
Alignment:
Q  7 ctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagaca--ctactaaataag-----------cactag 93  Q
    ||||||||||||||| ||||| || | |||||||||||||||| | ||||||||||| ||||||| |||  |||||||||||            ||||||    
T  23859825 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactag 23859924  T
Q  94 ggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagttt 184  Q
     ||| ||||  |||||||||||||||||||| ||||| |||||||||| ||| | ||||| | |||||||||         ||||||||| |||||||||    
T  23859925 agaaatcttagcttttctagatccttctagtcttatgaactagagtatgcatgtttctaggcctttctttgtaatcaatatttctagataattctagttt 23860024  T
Q  185 ataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcat 284  Q
     ||||| |||||||||||||||||||||||||||||||||||||| |||||||  | ||| |||||||||||||||              |||||| |||    
T  23860025 gtaatgtagagccttcctagagtagtataaataaggctcaccaccaagtgtttacgtatattcaagatactcaagc--------------attgaaacat 23860110  T
Q  285 tcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    | || |||||  |  |||||||||||||||||||| ||||||| ||||||| | | ||||||||||||||||||||||    
T  23860111 ttaaataataatatctttctttgagaatattagagagtttctctattttctatgcttttccttttgtccctgagccaa 23860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34576959 - 34576694
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact--actaaataa-----------g 87  Q
    ||||||||||||||||||||| ||||| || |||||||||| |||||||  ||||||  |||| |||||| ||||||  |||||||||           |    
T  34576959 ggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaataaaattacg 34576860  T
Q  88 cactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttc 178  Q
    |||||| ||| |||| |||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||||||||         |||||||||||||    
T  34576859 cactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatatttc 34576760  T
Q  179 tagtttataatggagagccttcct-agagtagtataaataaggctcaccacctagtgttttggcat 243  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||||||||||| | ||||||| |||||    
T  34576759 tagtttgtaatgtagagccttcctaagattagtataaataaggctcaccatcaagtgtttaggcat 34576694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 5164237 - 5164151
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5164237 attgaagcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 5164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 8995156 - 8995076
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccct 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  8995156 attgaatcattcaagtaatataacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccct 8995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 15730013 - 15730093
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccct 355  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  15730013 attgaatcattcaagtaatataacttttatttgagaatattagagagtttctctattttctctacctttccttttgtccct 15730093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 39816151 - 39816089
Alignment:
Q  299 ttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 39816089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 34576665 - 34576612
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtcc 353  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  34576665 tttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 8995210 - 8995169
Alignment:
Q  198 ttcctagagtagtataaataaggctcaccacctagtgttttg 239  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  8995210 ttcctagagtagtataaataaggctctccaccaagtgttttg 8995169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 11852511 - 11852175
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11852511 ggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 11852412  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
     | ||||||||||  ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  11852411 ataacttttctaggaccttctaggcttatgtactagagtatccatatctctagacttttatttgtttctagatatttctagttggtaatggagagccttc 11852312  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||                    || |||||||||    ||||||||||||||||||||||||    
T  11852311 ctagagtagtataaataaggctcaccacctagtgttttgg--------------------atcgtcaagcat----tgaatcattcaagtaatataactt 11852236  T
Q  301 ttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11852235 ttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11852175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23164586 - 23164347
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  23164586 ggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaacactagggaagtc 23164487  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  23164486 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttc 23164387  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttgg 240  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  23164386 ctagagtagtataaataaggcccaccacctagtgttttgg 23164347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37207710 - 37207948
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37207710 ggaagtctctagaagactaaagaataatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtc 37207809  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  37207810 ttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttc 37207909  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37207910 ctagagtagtataaataaggctcaccacctagtgttttg 37207948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11850253 - 11850014
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  11850253 ggaagtctctagaagactaaagaataatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaataagcactagggaagtc 11850154  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || | ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  11850153 ttaaattttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttc 11850054  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttgg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11850053 ctagagtagtataaataaggctcaccacctagtgttttgg 11850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22600750 - 22600989
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcactagggaagtc 100  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  22600750 ggaagtctctagaagactaaataataatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaataagcactagggaagtc 22600849  T
Q  101 ttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttc 200  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||     
T  22600850 ttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagtcttg 22600949  T
Q  201 ctagagtagtataaataaggctcaccacctagtgttttgg 240  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  22600950 ctaaagtagtataaataaggctcaccacctagtgttttgg 22600989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 37215396 - 37215539
Alignment:
Q  96 aagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagag 195  Q
    ||||||| ||||||||||||||||||||  |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||| ||||    
T  37215396 aagtcttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagag 37215495  T
Q  196 ccttcctagagtagtataaataaggctcaccacctagtgttttg 239  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  37215496 ccttcctagagtagtataaataaggctcaccacatagtgttttg 37215539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1779571 - 1779316
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact--actaaataa------gcacta 92  Q
    |||||| ||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||  |||||||||      ||||||    
T  1779571 ggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaagcacta 1779472  T
Q  93 gggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtt 183  Q
    |  || |||| |  ||||||||||||||||||  |||| |||||||||||||| | ||||| | |||||||||         ||||||||| ||||||||    
T  1779471 gaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtt 1779372  T
Q  184 tataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg 239  Q
    | ||||| |||||||||||||||| ||||||||||||||||||| | |||||||||    
T  1779371 tgtaatgtagagccttcctagagtggtataaataaggctcaccaacaagtgttttg 1779316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 11850003 - 11849916
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11850003 attgaatcattcaaataatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 11849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 23164340 - 23164254
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  23164340 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 23164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 22601000 - 22601088
Alignment:
Q  275 attgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  22601000 attgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccaa 22601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 37215551 - 37215638
Alignment:
Q  275 attgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  37215551 attgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37215638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 1779303 - 1779222
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||     |||||||||||||||||||||    
T  1779303 attgaatcattcaagtaatataacttttctttgagaatattagagtgttcctctattttct-----tttccttttgtccctgagcca 1779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 21743719 - 21743797
Alignment:
Q  283 attcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||| ||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  21743719 attcaaataatataaactttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgggcca 21743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 37207998 - 37208070
Alignment:
Q  290 taatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||| |||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  37207998 taatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 21743622 - 21743709
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaag 250  Q
    ||||| ||||||||| |||||| || || ||||||||||||||||||||||||||||  |||||||| |||| || ||||||||||||    
T  21743622 tgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaataagattcaccaccaagtggttaggcatactcaag 21743709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 15469197 - 15469258
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  15469197 tttctttgagaatattagagagtttctctattttttttacctttccttttgtccctgagcca 15469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1779805 - 1779587
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagaca--ctact-----aaat-aagcacta 92  Q
    ||||||||| | ||||||||| ||||| || ||||||||||||||||||  |||||||   || |||||||||||  |||||     |||| |||| |||    
T  1779805 ggaagtctccataacactaaagaataatatggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaagcgcta 1779706  T
Q  93 gggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt---------tgtttctagatatttctagtt 183  Q
    ||||| |||| |  ||||||||||||||||||  |||| |||||| ||||| ||||||||| | |||| |         |||||||||||||||||||||    
T  1779705 gggaaatcttaatgtttctagatccttctagtcatatgaactagaatatccctatctctaggcctttccttgtaatcaatgtttctagatatttctagtt 1779606  T
Q  184 tataatggagagccttcct 202  Q
    | ||||| | |||||||||    
T  1779605 tgtaatgtaaagccttcct 1779587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 1779221 - 1779181
Alignment:
Q  197 cttcctagagtagtataaataaggctcaccacctagtgttt 237  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  1779221 cttcctagagtagtataaataaggctcaccaccaagtgttt 1779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 15469006 - 15469086
Alignment:
Q  85 aagcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgt 165  Q
    |||||||||| || | || |||||||||||||| ||||||  |||| | ||| ||||| ||||||||| ||||||| ||||    
T  15469006 aagcactaggaaaatattaacttttctagatccatctagtcatatgaattagtgtatctatatctctaaacttttccttgt 15469086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 126 - 361
Target Start/End: Original strand, 1579 - 1801
Alignment:
Q  126 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1579 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcac 1678  T
Q  226 cacctagtgttttggcatactcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttc 325  Q
    ||||||||||||||||         ||||||||||||  ||||||    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1679 cacctagtgttttggc---------atactcaagcatcatcaagc----attgaatcattcaagtaatataacttttctttgaggatattagagtgtttc 1765  T
Q  326 tcaattttctctacctttccttttgtccctgagcca 361  Q
    || |||||||||||||||||||||||||||||||||    
T  1766 tctattttctctacctttccttttgtccctgagcca 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 4530835 - 4531020
Alignment:
Q  163 tgtttctagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcat 262  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaag---------cat 4530925  T
Q  263 agtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
      |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4530926 catcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4531020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 169 - 362
Target Start/End: Original strand, 4533138 - 4533318
Alignment:
Q  169 tagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaa 268  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||  ||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaag---------catcatcaa 4533228  T
Q  269 gcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 362  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4533229 gcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 4533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18966470 - 18966221
Alignment:
Q  1 ggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact--actaaat-----------aag 87  Q
    ||||||||||||||||| ||| ||||| |  |||||||||||||||||||  ||||||||||  ||||||||| |||  |||||||           |||    
T  18966470 ggaagtctctagaacaccaaagaataatagggaagtctctagaatactagataataataaggtagctactagatactctactaaatgaaataaaattaag 18966371  T
Q  88 cactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttata 187  Q
    ||||||| || |||| |  ||||||||||||||||||  || |||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |     
T  18966370 cactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttggtttctagatatttctagtgtgtc 18966271  T
Q  188 atggagagccttcctagagtagtataaataaggctcaccacctagtgttt 237  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  18966270 atggagtgtcttcctagagtagtataaataaggctcaccaccaagtgttt 18966221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 1701104 - 1701179
Alignment:
Q  88 cactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttcttt 163  Q
    |||||||||| |||| |||||||||||||||||||||  |||| | |||| ||||||||| ||||| |||||||||    
T  1701104 cactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 8535522 - 8535578
Alignment:
Q  106 ttttctagatccttctagttttatgtactagagtatccatatctctagacttttctt 162  Q
    |||| ||||||||||||||  |||  |||| ||||||||||||||||||||||||||    
T  8535522 ttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 29261 - 29426
Alignment:
Q  84 taagcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtt 183  Q
    |||||||||||||| |||| |  ||||||||||||||||||  |||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttctt-gtttctagatatttttagtt 29359  T
Q  184 tataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaag 250  Q
    | |||||||||| ||||||||||||||||||||||||||||||||| ||||  | ||||||||||||    
T  29360 tgtaatggagagtcttcctagagtagtataaataaggctcaccaccaagtgcgtaggcatactcaag 29426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 31574 - 31741
Alignment:
Q  84 taagcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatat--ctctagacttttctttgtttctagatatttctag 181  Q
    |||||||||||||| |||| |  ||||||||||||||||||  |||||||||||  ||||||||  ||||||||||||||| |||| |||||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt-gtttttagatatttctag 31672  T
Q  182 tttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaag 250  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  31673 tttgtaatggagagccttcctagagtagtataaataaggctcaccaccaagtgtgtaggcatactcaag 31741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 29453 - 29514
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  29453 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccctgagcca 29514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 31768 - 31829
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  31768 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgagcca 31829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 88445 - 88531
Alignment:
Q  275 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  88445 attgaatcattcaagtaatataacttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgagcca 88531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 53 - 140
Alignment:
Q  275 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  53 attgaatcattcaagtaatataacttttcgtttgagaatattaaagtgtttctctattttctctacctttccttttgtccctgagcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 283 - 361
Target Start/End: Complemental strand, 3785 - 3707
Alignment:
Q  283 attcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 361  Q
    |||||| ||||||||  |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  3785 attcaaataatataaactttctttgagaatattagagagttactctattttctctacctttccttttgtccctgagcca 3707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 21199149 - 21199374
Alignment:
Q  23 aataaaatagaagtctctagaatactagggaataataaggatgctactagacact--actaaataa------gcactagggaagtcttgacttttctaga 114  Q
    ||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||  |||||||||      |||||||  || |||| |  ||||||||    
T  21199149 aataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttctaga 21199248  T
Q  115 tccttctagttttatgtactagagtatccatat--ctctagacttttctttgt---------ttctagatatttctagtttataatggagagccttccta 203  Q
    ||||||||||  |||| ||| ||||||||||||  |||||| | |||| ||||         ||||||||||||||||||| ||||| | |||||||||     
T  21199249 tccttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttcctg 21199348  T
Q  204 gagtagtataaataaggctcaccacc 229  Q
    ||||| ||||||||||| ||||||||    
T  21199349 gagtactataaataaggttcaccacc 21199374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 20642300 - 20642359
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 359  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||    
T  20642300 tttctttgagaatattagagaatttctctattttctctacctttcattttgtccctgagc 20642359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 11287 - 11358
Alignment:
Q  2 gaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactaga 73  Q
    |||||||||||||||||||| ||||| || |||||||||| |||  ||  |||||||||||| |||||||||    
T  11287 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 11358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 64082 - 64144
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 364  Q
    ||||||||||||||||  || ||||||| ||||||| |||||||| ||||||| |||| ||||||    
T  64082 tttctttgagaatatt--agggtttctctattttctttacctttcattttgtctctgatccaaat 64144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 71414 - 71476
Alignment:
Q  300 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 364  Q
    ||||||||||||||||  || ||||||| ||||||| |||||||| ||||||| |||| ||||||    
T  71414 tttctttgagaatatt--agggtttctctattttctttacctttcattttgtctctgatccaaat 71476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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