View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_high_30 (Length: 239)
Name: NF10925_high_30
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5948105 - 5948337
Alignment:
| Q |
1 |
caagaaaagatattctattacccaaaaagaaaatgggtagccatcatgtattcacctgtgtgaccttttctgtc-------------gacagacttaaat |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5948105 |
caagaaaagatattctattacccaaaaagaaaatgggtggccatcacgtattcacctgtgtgaccttttctgtcgactcattgtgtcgacagacttaaat |
5948204 |
T |
|
| Q |
88 |
tgctctttgtggtctaatcatcattggtgtttgacccttcgaattcggtttatttcacctatttattcccgtattgtcaaaagacatgcatttagtgtaa |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5948205 |
tgctctttgtggtctaatcatcattggtgtttgacccttcgaattcggtttatttcaccaatttattcccgtattgtcaaaagacatgcatttagtgtaa |
5948304 |
T |
|
| Q |
188 |
ctttataaatcaatctttcctccacctggacga |
220 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5948305 |
ctttataaatcaatctttcctccacctggacga |
5948337 |
T |
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