View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_high_36 (Length: 205)
Name: NF10925_high_36
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 21264013 - 21264190
Alignment:
| Q |
12 |
cacagaaagcatttgcaaggcccaaattaaatgcaaaacacccaatgccttccccatttctatttctgaatactcctgcacaagctccttggccattagt |
111 |
Q |
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| T |
21264013 |
cacagaaagcatttgcaaggcccaaattaaatgcaaaacacccaatgccttccccatttctatttctgaatactcctgcacaagctgcttggccattagt |
21264112 |
T |
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| Q |
112 |
gttacactttatccaatgaaggataggaggatgccaaataactttagtgattttatgagctttaggatagtgagtatt |
189 |
Q |
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| T |
21264113 |
gttacactttatccaatgaaggattggaggatgccaaataaatttagtgattttatgagctttaggatagtgagtatt |
21264190 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 21468666 - 21468751
Alignment:
| Q |
17 |
aaagcatttgcaaggcccaaattaaatgcaaaacacccaatgccttccccatttctatttctgaatactcctgcacaagctccttg |
102 |
Q |
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||||||||| ||| || ||||||| ||||||||| |||| || ||| ||||||| |||||||| | ||||||||||||||||| |
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| T |
21468666 |
aaagcattttcaatccctaaattaactgcaaaacagccaaggctttctccatttcggtttctgaaaatacctgcacaagctccttg |
21468751 |
T |
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