View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_high_6 (Length: 478)

Name: NF10925_high_6
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_high_6
NF10925_high_6
[»] chr3 (8 HSPs)
chr3 (11-460)||(32861826-32862280)
chr3 (401-459)||(49526716-49526774)
chr3 (162-220)||(10773480-10773538)
chr3 (87-184)||(34121716-34121812)
chr3 (401-458)||(45423815-45423872)
chr3 (156-221)||(50301850-50301915)
chr3 (412-458)||(41459069-41459115)
chr3 (401-458)||(44224759-44224816)
[»] chr8 (15 HSPs)
chr8 (90-277)||(42476467-42476658)
chr8 (156-276)||(28733167-28733287)
chr8 (163-232)||(10227258-10227326)
chr8 (401-458)||(3619115-3619172)
chr8 (401-458)||(8702454-8702511)
chr8 (401-448)||(37458345-37458392)
chr8 (401-454)||(14382202-14382255)
chr8 (11-43)||(42476361-42476393)
chr8 (193-232)||(10227337-10227376)
chr8 (377-459)||(26490937-26491019)
chr8 (401-458)||(15206701-15206758)
chr8 (401-458)||(22552787-22552844)
chr8 (382-458)||(30913798-30913875)
chr8 (401-458)||(31246362-31246419)
chr8 (156-276)||(4884243-4884363)
[»] chr2 (8 HSPs)
chr2 (90-271)||(33522289-33522474)
chr2 (401-458)||(25747926-25747983)
chr2 (140-232)||(23757695-23757791)
chr2 (65-108)||(23757824-23757867)
chr2 (401-458)||(3853906-3853963)
chr2 (156-281)||(43178345-43178470)
chr2 (11-43)||(33522548-33522580)
chr2 (401-458)||(3602504-3602561)
[»] chr5 (3 HSPs)
chr5 (156-276)||(37344522-37344642)
chr5 (401-458)||(7178789-7178846)
chr5 (377-458)||(2694780-2694861)
[»] chr1 (7 HSPs)
chr1 (156-232)||(3324913-3324989)
chr1 (377-458)||(25061247-25061328)
chr1 (401-458)||(23628753-23628810)
chr1 (401-459)||(48002415-48002473)
chr1 (154-264)||(32001396-32001506)
chr1 (156-225)||(48315122-48315191)
chr1 (401-458)||(48510929-48510986)
[»] chr4 (16 HSPs)
chr4 (140-276)||(39264676-39264816)
chr4 (156-271)||(48997072-48997187)
chr4 (140-232)||(2737717-2737813)
chr4 (156-231)||(38372670-38372745)
chr4 (377-457)||(28752498-28752577)
chr4 (156-232)||(45065564-45065640)
chr4 (401-458)||(19599542-19599599)
chr4 (408-460)||(4682211-4682263)
chr4 (405-439)||(8683081-8683115)
chr4 (401-443)||(56241882-56241924)
chr4 (401-458)||(14075997-14076054)
chr4 (401-458)||(38305993-38306050)
chr4 (80-113)||(45065683-45065716)
chr4 (401-458)||(49136504-49136561)
chr4 (210-270)||(22771909-22771969)
chr4 (156-276)||(49705158-49705278)
[»] scaffold0020 (1 HSPs)
scaffold0020 (382-447)||(138536-138601)
[»] chr6 (2 HSPs)
chr6 (401-458)||(21254925-21254982)
chr6 (156-232)||(23112055-23112131)
[»] chr7 (6 HSPs)
chr7 (382-458)||(1766443-1766519)
chr7 (145-271)||(31846517-31846642)
chr7 (198-276)||(46401232-46401310)
chr7 (401-458)||(40903201-40903258)
chr7 (405-458)||(46285378-46285431)
chr7 (401-458)||(48459728-48459785)
[»] scaffold0041 (1 HSPs)
scaffold0041 (401-458)||(46760-46817)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 460
Target Start/End: Complemental strand, 32862280 - 32861826
Alignment:
Q  11 cagagaagaagaggtgaattggattgaaattgannnnnnnnn-ctcttcagaatagtgagaagtgagaactgatatgattaattgagatgtaatggttca 109  Q
    |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862280 cagagaagaagaggtgaattggattgaaattgattttttttttctcttcagaatagtgagaagtgagaactgatatgattaattgagatgtaatggttca 32862181  T
Q  110 gttcggttcacaacaattaaccgagtttaataaccgttcggttcagt----gaattgtttttaaaataacggtttggttcaataaataatgcaatgattc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862180 gttcggttcacaacaattaaccgagtttaataaccgttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattc 32862081  T
Q  206 agttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctacaaatatccatcaataaaaattagtgtta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862080 agttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctacaaatatccatcaataaaaattagtgtta 32861981  T
Q  306 gattgacctatcctgtctgcagaccaacgtttgcgggttccaaagcactaagtatgtgtttggttatgcagtggtgaaaagtaagttgagcatatattga 405  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32861980 gattgacctatcctgtctgcagaccaacgtttgcaggttccaaagcactaagtatgtgtttggttatgcagtggtgaaaagtaagttgagcgtatattga 32861881  T
Q  406 tttatgtttggatacattaacataaaagagattcttatcaatttatgttgtttat 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32861880 tttatgtttggatacattaacataaaagagattcttatcaatttatgttgtttat 32861826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 49526716 - 49526774
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttta 459  Q
    ||||||||||||||||||||||| |  |||||  |||||||||||||||||||||||||    
T  49526716 attgatttatgtttggatacattcatgtaaaattgattcttatcaatttatgttgttta 49526774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 10773538 - 10773480
Alignment:
Q  162 gtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagttt 220  Q
    |||||||||||||||||| ||||||||||  |||  |||| ||||||||||||||||||    
T  10773538 gtttttaaaataacggttcggttcaataatcaataaaatggttcagttaattttagttt 10773480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 34121812 - 34121716
Alignment:
Q  87 attaattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggttcagtgaattgtttttaaaataacggtttggtt 184  Q
    ||||||| || ||||||||||| |||||||||| |||||||||| | |  ||| ||| |||||||| |||||| ||| |||||||||| |||| ||||    
T  34121812 attaattaagttgtaatggttcggttcggttcataacaattaactgcggataacaacggttcggtt-agtgaactgtctttaaaataatggttcggtt 34121716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 45423815 - 45423872
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||| |||||||||||||| |||||  |||||| |||||||||||||| |||||||||    
T  45423815 attggtttatgtttggatatattaaagtaaaagtgattcttatcaattcatgttgttt 45423872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 50301915 - 50301850
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttg 221  Q
    |||| |||||||||||||| |||| || |||||||  |||| |||| |||||||||||||||||||    
T  50301915 tgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttg 50301850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 41459115 - 41459069
Alignment:
Q  412 tttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||| |||||||||||| |||||||||||||| ||| |||||    
T  41459115 tttggataccttaacataaaagtgattcttatcaattcatggtgttt 41459069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 44224816 - 44224759
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| | || |||||| ||||||||| | || |||||||||    
T  44224816 attgatttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgttt 44224759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 42476467 - 42476658
Alignment:
Q  90 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggttc----agtgaattgtttttaaaataacggtttggttc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||  ||||    
T  42476467 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgtttgattcagttagtgaattgtttttaaaataacggttcagttc 42476566  T
Q  186 aataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactcctac 277  Q
    ||||| |||| ||||  || ||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||||| ||| |||||    
T  42476567 aataactaatacaatagtttagttaattttagtttggttcagttcggttaaccggttcagttcagtttttggttatttttgctcacccctac 42476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 28733287 - 28733167
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    |||| |||||||||||||||||||  ||| |||||  |||| ||||||||||||||||||||||| |||| ||| || |||||||||  | |||||||||    
T  28733287 tgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaattttagtttagttcggtttggttaaccggttcaattcagttttt 28733188  T
Q  256 ggttatttttgcccactccta 276  Q
     | ||||||||||||| ||||    
T  28733187 agatatttttgcccaccccta 28733167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 10227258 - 10227326
Alignment:
Q  163 tttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    ||||||||| ||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  10227258 tttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaattttagtttggttcagttcgg 10227326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 3619115 - 3619172
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||| |||||||||||||||| || |||| ||||||||||||| ||||||||||    
T  3619115 attgatttgtgtttggatacattaatatgaaagtgattcttatcaatgtatgttgttt 3619172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 8702454 - 8702511
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||||||||||||||||||| | | |||| |||||||||||||| |||||||||    
T  8702454 attgatttatgtttggatacattatccttaaagtgattcttatcaattcatgttgttt 8702511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 37458345 - 37458392
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatt 448  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  37458345 attgatttatgtttggatatattgacataaaagtgattcttatcaatt 37458392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 14382255 - 14382202
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgtt 454  Q
    |||||||||||||||||||||||| | | |||| |||||||||||||| |||||    
T  14382255 attgatttatgtttggatacattatccttaaagtgattcttatcaattcatgtt 14382202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 42476361 - 42476393
Alignment:
Q  11 cagagaagaagaggtgaattggattgaaattga 43  Q
    |||||||||||||||||||||||||||||||||    
T  42476361 cagagaagaagaggtgaattggattgaaattga 42476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 10227337 - 10227376
Alignment:
Q  193 aatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  10227337 aatgtaatggttcagttaattttagtttggttcagttcgg 10227376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 459
Target Start/End: Complemental strand, 26491019 - 26490937
Alignment:
Q  377 tggtgaaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttta 459  Q
    |||| |||||| |||||||  || |||||||| ||||||||||| || | ||| ||| ||||||||| ||||||| |||||||    
T  26491019 tggttaaaagtgagttgagtgtaaattgatttgtgtttggatacctttatatagaagtgattcttattaatttattttgttta 26490937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 15206758 - 15206701
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||||| || || ||| ||||||||  |||| |||||||||    
T  15206758 attgatttatgtttggatacattgacttagaagtgattcttaaaaattcatgttgttt 15206701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 22552787 - 22552844
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||||||||||||| |||||   |||||| |||| ||||||||| |||||||||    
T  22552787 attgatttatgtttggatgcattattgtaaaagtgattattatcaattcatgttgttt 22552844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 30913875 - 30913798
Alignment:
Q  382 aaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaa-tttatgttgttt 458  Q
    ||||||||||||| | || | ||||||||||||  ||| ||| | ||||||| |||||||||||| ||||||||||||    
T  30913875 aaaagtaagttgaacgtaaaatgatttatgtttaaatatattcaaataaaagtgattcttatcaattttatgttgttt 30913798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 31246362 - 31246419
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||||||||||||||| ||||   ||||| ||||||||| |||| |||||||||    
T  31246362 attgatttatgtttggataccttaaagcaaaagtgattcttataaattcatgttgttt 31246419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 4884363 - 4884243
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  4884363 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 4884264  T
Q  256 ggttatttttgcccactccta 276  Q
    |||||||||||||||| ||||    
T  4884263 ggttatttttgcccaccccta 4884243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 90 - 271
Target Start/End: Complemental strand, 33522474 - 33522289
Alignment:
Q  90 aattgagatgtaatggttcagttcggttcacaacaattaaccgagtttaataaccgttcggt----tcagtgaattgtttttaaaataacggtttggttc 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    | ||||||||||||||||||||||||||  ||||    
T  33522474 aattgagatgtaatggttaagttcggttcacaacaattaaccgagtttaataaccgtttggtttagttagtgaattgtttttaaaataacggttcagttc 33522375  T
Q  186 aataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccac 271  Q
    ||||| | || ||||  |||||||||||||||||| ||||| ||||| |||||||||    |||||||||||||||||||| ||||    
T  33522374 aataactcatacaatagttcagttaattttagtttagttcacttcggttaaccggttcagttcagtttttggttatttttgtccac 33522289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 25747926 - 25747983
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  25747926 attgatttatgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 25747983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 23757791 - 23757695
Alignment:
Q  140 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    ||||||||||||||||| |||    |||| |||||||||||| | ||||||||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  23757791 taaccgttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaattttagtttggttcggttcgg 23757695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 23757867 - 23757824
Alignment:
Q  65 gtgagaagtgagaactgatatgattaattgagatgtaatggttc 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23757867 gtgagaattgagaactgatatgattaattgagatgtaatggttc 23757824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 3853963 - 3853906
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||||| |  |||||  ||||||||||||| ||||||||||    
T  3853963 attgatttatgtttggatacattcatgtaaaattgattcttatcaatctatgttgttt 3853906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 43178345 - 43178470
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  43178345 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 43178444  T
Q  256 ggttatttttgcccactcctacaaat 281  Q
    |||||||||||||||| |||||||||    
T  43178445 ggttatttttgcccacccctacaaat 43178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 33522580 - 33522548
Alignment:
Q  11 cagagaagaagaggtgaattggattgaaattga 43  Q
    |||||||||||||||||||||||||||||||||    
T  33522580 cagagaagaagaggtgaattggattgaaattga 33522548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 3602504 - 3602561
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||| ||||||||||||| ||||| ||||||| |||| |||| |||| |||||||||    
T  3602504 attgaattatgtttggatatattaaaataaaagtgatttttattaattcatgttgttt 3602561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 37344642 - 37344522
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    |||| ||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||| |||||||||| |||  |||| || |||||||||    
T  37344642 tgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgattcagttcggttaataggttcgattcagttttt 37344543  T
Q  256 ggttatttttgcccactccta 276  Q
    || ||||||||||||| ||||    
T  37344542 ggatatttttgcccaccccta 37344522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 7178846 - 7178789
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  7178846 attgatttatgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 7178789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 458
Target Start/End: Original strand, 2694780 - 2694861
Alignment:
Q  377 tggtgaaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||| |||||| |||||| |||| ||| |||||| ||| ||||  |||||||||||| |||||||||||||| ||| |||||    
T  2694780 tggttaaaagtgagttgatcataaattaatttatttttagataacttaacataaaagtgattcttatcaattgatgatgttt 2694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 3324913 - 3324989
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    |||||||||||||||||||||||| |||| |||||  |||| |||| ||||||||||||||||||||||||||||||    
T  3324913 tgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaattttagtttggttcagttcgg 3324989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 25061328 - 25061247
Alignment:
Q  377 tggtgaaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||| |||||| |||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||    
T  25061328 tggttaaaagtgagttgaacataaattgatttatgtttggataccttaacataaaagtgattcttatcaattgatgatgttt 25061247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 23628753 - 23628810
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  23628753 attgatttatgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 23628810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 48002415 - 48002473
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttta 459  Q
    |||||||||||||||||||||||| || ||||| |||||||||| ||||||| ||||||    
T  48002415 attgatttatgtttggatacattaccacaaaagtgattcttatcgatttatgatgttta 48002473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 32001396 - 32001506
Alignment:
Q  154 agtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttt 253  Q
    |||||||||| |||||||||| |||| ||||  |||| ||||  |||| |||||||||||||| | | ||||||||||| ||| ||||| |    |||||    
T  32001396 agtgaattgtctttaaaataatggttcggttagataattaatataatggttcagttaattttaatatagttcagttcggttaagcggttcggaatagttt 32001495  T
Q  254 ttggttatttt 264  Q
    |||||||||||    
T  32001496 ttggttatttt 32001506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 48315122 - 48315191
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttc 225  Q
    |||| ||||||||||||||| ||| | || |||||  |||| |||| |||||||||||||||||||||||    
T  48315122 tgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaattttagtttggttc 48315191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 48510986 - 48510929
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| |  | |||||| ||||||||| |||| |||||||||    
T  48510986 attgatttatgtttggatacacttgcttaaaagtgattcttatgaattgatgttgttt 48510929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 39264816 - 39264676
Alignment:
Q  140 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggcta 235  Q
    ||||||||||||||||| |||    |||||||||||||| ||||  |||||||||  |||| |||| ||| |||||||||||||||||||| || || ||    
T  39264816 taaccgttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaattttagtttggttcattttggtta 39264717  T
Q  236 accggtttgactcagtttttggttatttttgcccactccta 276  Q
    | ||||||   ||||||||||| ||||||||||||| ||||    
T  39264716 atcggtttagttcagtttttggatatttttgcccaccccta 39264676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 48997072 - 48997187
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    |||| |||||||||||||||||||||||| |||||  |||| | || ||| |||||||||| ||||||||||||||| |||||| || || | | |||||    
T  48997072 tgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaattttaatttggttcagttcggttaaccgattcgatttaattttt 48997171  T
Q  256 ggttatttttgcccac 271  Q
    || |||||||||||||    
T  48997172 ggatatttttgcccac 48997187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 2737717 - 2737813
Alignment:
Q  140 taaccgttcggttcagtgaat----tgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    ||||||||||||||||| |||    ||||||||||||||||||| ||||||||||  |||| |||| |||||||||||||| |||||||| ||||||    
T  2737717 taaccgttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaattttaatttggttcggttcgg 2737813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 38372670 - 38372745
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcg 231  Q
    |||| ||||||||||||||| ||| ||||||||||  ||||||||  |||||||||||||||||| |||| |||||    
T  38372670 tgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaattttagtttagttcggttcg 38372745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 28752577 - 28752498
Alignment:
Q  377 tggtgaaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgtt 457  Q
    |||| |||||| |||||| ||||  ||||||||||||||||| | |||||||||||| |||||||||||||| ||| ||||    
T  28752577 tggttaaaagtgagttga-cataatttgatttatgtttggatgccttaacataaaagtgattcttatcaattcatgatgtt 28752498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 45065640 - 45065564
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    |||| ||||||||||||||||  | | ||||||||  |||| |||||||||| ||||||||||||||||| ||||||    
T  45065640 tgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaattttagtttggttcggttcgg 45065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 19599542 - 19599599
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||||||||||||| || | || |||||  ||||||||||||||||||||||||    
T  19599542 attgatttatgtttggatgcaattacttaaaattgattcttatcaatttatgttgttt 19599599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 4682263 - 4682211
Alignment:
Q  408 tatgtttggatacattaacataaaagagattcttatcaatttatgttgtttat 460  Q
    |||||||||||| ||||||||||||  |||||| ||||||||||||| |||||    
T  4682263 tatgtttggatagattaacataaaaatgattctcatcaatttatgttctttat 4682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 8683081 - 8683115
Alignment:
Q  405 atttatgtttggatacattaacataaaagagattc 439  Q
    ||||||||||||||||||||||||||||| |||||    
T  8683081 atttatgtttggatacattaacataaaagtgattc 8683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 56241882 - 56241924
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttat 443  Q
    |||||||||||||||||||||||||  |||||| |||||||||    
T  56241882 attgatttatgtttggatacattaatgtaaaagtgattcttat 56241924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 14076054 - 14075997
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||| ||||  || |||||| ||||||||| |||| |||||||||    
T  14076054 attgatttatgtttggaaacatatacttaaaagtgattcttatgaattgatgttgttt 14075997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 38306050 - 38305993
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||||||||||||||||| ||||   ||||| ||||||||| |||| |||||||||    
T  38306050 attgatttatgtttggataccttaaagcaaaagtgattcttataaattcatgttgttt 38305993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 45065716 - 45065683
Alignment:
Q  80 tgatatgattaattgagatgtaatggttcagttc 113  Q
    ||||||||||||||||||| ||||||||||||||    
T  45065716 tgatatgattaattgagatctaatggttcagttc 45065683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 49136561 - 49136504
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| | || |||||| ||||||||| | || |||||||||    
T  49136561 attgatttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgttt 49136504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 22771969 - 22771909
Alignment:
Q  210 aattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgccca 270  Q
    ||||||| | ||||||||||||| ||||| ||| |  || |||||||||||||||||||||    
T  22771969 aattttaatatggttcagttcggttaaccagttcggatcggtttttggttatttttgccca 22771909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 49705278 - 49705158
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagttttt 255  Q
    ||||||||| | ||||||| |||| ||||||| || |  |  |||| ||||||||||| |  |  ||||| |||||| ||||||||| || |  ||||||    
T  49705278 tgaattgttatcaaaataatggttcggttcaagaattggttaaatggttcagttaattctgatacggttcggttcggttaaccggttcgaattggttttt 49705179  T
Q  256 ggttatttttgcccactccta 276  Q
    |||||||||||||||| ||||    
T  49705178 ggttatttttgcccaccccta 49705158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 138536 - 138601
Alignment:
Q  382 aaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaat 447  Q
    |||||| || ||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||    
T  138536 aaaagtgagctgaacataaattgatttatgtttggataccttaacataaaagtgattcttatcaat 138601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 21254925 - 21254982
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  21254925 attgatttatgtttggatacaataacctaaaattgattcttatcaatttatgttgttt 21254982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 23112055 - 23112131
Alignment:
Q  156 tgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcgg 232  Q
    |||| ||||||||||||||||||| ||||||||||  | || |||| || | |||||||| ||||||||| ||||||    
T  23112055 tgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggttcgg 23112131  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 1766519 - 1766443
Alignment:
Q  382 aaaagtaagttgagcatatattgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||||| |||||| | || |||||||||| ||||||||| |||||||||||| |||||||||||||| ||| |||||    
T  1766519 aaaagtgagttgaacctaaattgatttatatttggataccttaacataaaagtgattcttatcaattgatgatgttt 1766443  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 31846517 - 31846642
Alignment:
Q  145 gttcggttcagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaattttagtttggttcagttcggctaaccggtttg 244  Q
    |||||||| ||||||||||| | ||||||| ||||| |||| | || |  |  |||| |||||||||||||  | |||||| |||||| ||||| ||| |    
T  31846517 gttcggtt-agtgaattgttatcaaaataatggtttcgttcgagaattggttaaatggttcagttaattttgatatggttcggttcggttaaccagttcg 31846615  T
Q  245 actcagtttttggttatttttgcccac 271  Q
    | |  ||||||||||||||||||||||    
T  31846616 aattggtttttggttatttttgcccac 31846642  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 46401232 - 46401310
Alignment:
Q  198 aatgattcagttaattttagtttggttcagttcggctaaccggtttgactcagtttttggttatttttgcccactccta 276  Q
    |||| |||||||||||||  | |||||| |||||| |||||||||| | |  | |||||||||||||||||||| ||||    
T  46401232 aatggttcagttaattttgatatggttcggttcggttaaccggtttaaattgggttttggttatttttgcccaccccta 46401310  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 40903201 - 40903258
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||| |||||||||||||| |||||  |||||| |||| ||||||||| |||||||||    
T  40903201 attggtttatgtttggatatattaaagtaaaagtgatttttatcaattcatgttgttt 40903258  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 46285378 - 46285431
Alignment:
Q  405 atttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| || |||| |||||||| |||| |||| |||||    
T  46285378 atttatgtttggatacattaatatgaaagtgattcttagcaatatatgatgttt 46285431  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 48459785 - 48459728
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    ||||||||||||||||||||| | || |||||| ||||||||| |||  |||||||||    
T  48459785 attgatttatgtttggatacacttacttaaaagtgattcttatgaatggatgttgttt 48459728  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 46817 - 46760
Alignment:
Q  401 attgatttatgtttggatacattaacataaaagagattcttatcaatttatgttgttt 458  Q
    |||| |||||||||||||| |||||  |||||| |||| ||||||||| |||||||||    
T  46817 attggtttatgtttggatatattaaagtaaaagtgatttttatcaattcatgttgttt 46760  T

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