View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_low_1 (Length: 698)

Name: NF10925_low_1
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_low_1
NF10925_low_1
[»] chr3 (34 HSPs)
chr3 (18-571)||(30135195-30135741)
chr3 (18-571)||(30144746-30145292)
chr3 (18-557)||(30130505-30131028)
chr3 (211-571)||(30133799-30134153)
chr3 (18-344)||(30141545-30141870)
chr3 (490-664)||(30055345-30055517)
chr3 (481-664)||(30182844-30183025)
chr3 (549-679)||(30130033-30130157)
chr3 (260-380)||(30077190-30077306)
chr3 (131-238)||(50197100-50197207)
chr3 (131-247)||(11047446-11047562)
chr3 (22-111)||(30055737-30055828)
chr3 (117-260)||(50196835-50196977)
chr3 (284-380)||(30049108-30049201)
chr3 (119-227)||(22312204-22312311)
chr3 (36-116)||(30079435-30079515)
chr3 (18-108)||(30062486-30062576)
chr3 (183-260)||(20490917-20490995)
chr3 (56-117)||(30077301-30077362)
chr3 (18-86)||(30463163-30463232)
chr3 (260-374)||(30079325-30079439)
chr3 (117-176)||(20982647-20982706)
chr3 (266-344)||(30171513-30171590)
chr3 (56-111)||(30171596-30171651)
chr3 (117-238)||(20995470-20995589)
chr3 (72-116)||(30072053-30072097)
chr3 (377-440)||(30055659-30055718)
chr3 (177-247)||(36236569-36236638)
chr3 (18-54)||(30072232-30072268)
chr3 (117-212)||(22312417-22312512)
chr3 (119-255)||(20491068-20491201)
chr3 (117-169)||(20982174-20982226)
chr3 (405-437)||(30048808-30048840)
chr3 (110-199)||(36746782-36746873)
[»] chr7 (9 HSPs)
chr7 (117-240)||(2911971-2912094)
chr7 (142-260)||(8745860-8745978)
chr7 (117-247)||(5473272-5473402)
chr7 (117-255)||(23972397-23972534)
chr7 (120-247)||(41243214-41243342)
chr7 (117-247)||(8745657-8745789)
chr7 (117-217)||(35035253-35035353)
chr7 (157-260)||(36496230-36496333)
chr7 (131-201)||(35035466-35035535)
[»] chr5 (7 HSPs)
chr5 (117-260)||(8402121-8402264)
chr5 (167-260)||(8401992-8402085)
chr5 (146-255)||(28431959-28432068)
chr5 (131-260)||(6423931-6424061)
chr5 (168-223)||(42193723-42193778)
chr5 (117-152)||(31540323-31540358)
chr5 (192-242)||(12835659-12835709)
[»] chr4 (24 HSPs)
chr4 (117-249)||(36165462-36165594)
chr4 (117-249)||(1460392-1460524)
chr4 (113-248)||(23564283-23564418)
chr4 (131-217)||(11784979-11785065)
chr4 (117-259)||(18523203-18523345)
chr4 (142-260)||(23564547-23564665)
chr4 (183-247)||(55240630-55240694)
chr4 (145-254)||(857024-857133)
chr4 (118-215)||(36165714-36165808)
chr4 (123-249)||(55240370-55240494)
chr4 (117-255)||(9928751-9928893)
chr4 (117-217)||(23564106-23564204)
chr4 (117-235)||(9928990-9929105)
chr4 (179-255)||(19680323-19680399)
chr4 (192-255)||(18523012-18523075)
chr4 (117-247)||(36165893-36166023)
chr4 (163-248)||(16412982-16413067)
chr4 (117-232)||(53089795-53089910)
chr4 (190-255)||(2346419-2346484)
chr4 (117-169)||(8837128-8837180)
chr4 (134-234)||(54137110-54137210)
chr4 (117-240)||(36165124-36165247)
chr4 (115-154)||(37927656-37927695)
chr4 (129-175)||(23564418-23564464)
[»] chr8 (9 HSPs)
chr8 (122-249)||(30525160-30525287)
chr8 (120-247)||(30525372-30525497)
chr8 (117-248)||(32884537-32884668)
chr8 (117-247)||(28883667-28883793)
chr8 (117-240)||(32879712-32879835)
chr8 (108-177)||(27461233-27461302)
chr8 (119-177)||(33199666-33199724)
chr8 (190-235)||(12704268-12704313)
chr8 (183-247)||(42160217-42160281)
[»] chr2 (5 HSPs)
chr2 (117-250)||(43829820-43829953)
chr2 (117-235)||(43829620-43829739)
chr2 (131-248)||(41470116-41470233)
chr2 (129-196)||(4762500-4762566)
chr2 (119-160)||(36201865-36201906)
[»] chr6 (7 HSPs)
chr6 (117-247)||(10742184-10742315)
chr6 (117-200)||(6728573-6728656)
chr6 (117-210)||(8535595-8535688)
chr6 (117-167)||(11339957-11340007)
chr6 (115-152)||(33104580-33104617)
chr6 (189-247)||(33104647-33104707)
chr6 (162-210)||(8543041-8543089)
[»] chr1 (13 HSPs)
chr1 (117-263)||(3142872-3143018)
chr1 (117-255)||(3371580-3371717)
chr1 (117-212)||(10645531-10645626)
chr1 (117-238)||(25685668-25685788)
chr1 (192-240)||(12178101-12178149)
chr1 (183-233)||(10645792-10645842)
chr1 (117-154)||(30602336-30602373)
chr1 (119-240)||(35536789-35536910)
chr1 (119-210)||(32968509-32968600)
chr1 (166-248)||(8899249-8899330)
chr1 (185-221)||(370787-370823)
chr1 (168-228)||(9383552-9383612)
chr1 (122-154)||(32968764-32968796)
[»] scaffold0236 (1 HSPs)
scaffold0236 (157-249)||(22380-22472)
[»] scaffold1432 (1 HSPs)
scaffold1432 (131-240)||(952-1061)
[»] scaffold0557 (1 HSPs)
scaffold0557 (117-152)||(4632-4667)
[»] scaffold0549 (2 HSPs)
scaffold0549 (117-167)||(1056-1106)
scaffold0549 (117-167)||(3146-3196)
[»] scaffold0115 (1 HSPs)
scaffold0115 (183-240)||(46129-46186)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 30135741 - 30135195
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgttgtttct 117  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  30135741 catccaaatttcaataatgatgtatgttcatggttttcctttcatcagcatatcttatgcttttgttaggcctgttgtttaattaatatatgttgttttt 30135642  T
Q  118 gttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatc 217  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||| ||||||||  ||||||||||||||||||||||||||||    
T  30135641 gttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatc 30135543  T
Q  218 atttgagctagcttttgggatgaaatccaagcttatttcacattttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaatcaaa 317  Q
    |||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30135542 atttgagctaacttttgggatgagatccaagcctatttaacattttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaa 30135443  T
Q  318 atttgaacaattgaatctcattaccatatttcattataattcaaaagaagagtacaagatatcaattgtgggatttgttgtaataattaaagcatagctt 417  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  30135442 atttgaacaattgaatctcattacc--atttcattataattcaaaagaagagtacaagataacaattgtggggtttgttgtaataattaaagcatagctt 30135345  T
Q  418 tgttactctctatgcctatggaattagatcaaatccgcagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaatttggtg 517  Q
    ||||||  ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| ||    
T  30135344 tgttacgttctatgcctatgga---agatcaaatccgcagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaatttgatg 30135248  T
Q  518 gaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgtt 571  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  30135247 gaaggacaaattagtgtatg-tttgttgagatataaataaatacgaatattgtt 30135195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 30145292 - 30144746
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgttgtttct 117  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  30145292 catccaaatttcaataatgatgtatgttcatggttttcctttcatcagcatatcttatgcttttgttaggcctgttgtttaattaatatatgttgttttt 30145193  T
Q  118 gttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatc 217  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||| ||||||||  ||||||||||||||||||||||||||||    
T  30145192 gttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatc 30145094  T
Q  218 atttgagctagcttttgggatgaaatccaagcttatttcacattttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaatcaaa 317  Q
    |||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30145093 atttgagctaacttttgggatgagatccaagcctatttaacattttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaa 30144994  T
Q  318 atttgaacaattgaatctcattaccatatttcattataattcaaaagaagagtacaagatatcaattgtgggatttgttgtaataattaaagcatagctt 417  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  30144993 atttgaacaattgaatctcattacc--atttcattataattcaaaagaagagtacaagataacaattgtggggtttgttgtaataattaaagcatagctt 30144896  T
Q  418 tgttactctctatgcctatggaattagatcaaatccgcagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaatttggtg 517  Q
    ||||||  ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| ||    
T  30144895 tgttacgttctatgcctatgga---agatcaaatccgcagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaatttgatg 30144799  T
Q  518 gaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgtt 571  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  30144798 gaaggacaaattagtgtatg-tttgttgagatataaataaatacgaatattgtt 30144746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 30131028 - 30130505
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggc------atgttgtttaattaatatatgtt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  30131028 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcttaggcatgttgtttaattaatatatgtt 30130929  T
Q  112 gtttctgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtacc 211  Q
    ||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30130928 gtttccgttgaagttggttttgaagttatttttagtctgatatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtatc 30130829  T
Q  212 ctcatcatttgagctagcttttgggatgaaatccaagcttatttcacattttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatga 311  Q
     |||||||||||||||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30130828 ttcatcatttgagctagtttttgggatgagatccaaacctatttaacattttcaagtaatcaagaaaattgtacaattatacgatgaggtaaattgatga 30130729  T
Q  312 atcaaaatttgaacaattgaatctcattaccatatttcattataattcaaaagaagagtacaagatatcaattgtgggatttgttgtaataattaaagca 411  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  30130728 atcaaaatttgaacaattgaatctcattacc--atttcattataattcaaaagaagagtacaagataacaattgtggggtttgttgtaataattaaagca 30130631  T
Q  412 tagctttgttactctctatgcctatggaattagatcaaatccgcagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaat 511  Q
    ||||||||||||||||||||||||||||   |||||||||| ||||||||||||                 || ||||||||||||||||||||||||||    
T  30130630 tagctttgttactctctatgcctatgga---agatcaaatctgcagttaattaa----------------agactaagttgtccttattgtaatatgaat 30130550  T
Q  512 ttggtggaaggactaattagtgtatgttttgctgagatataaataa 557  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  30130549 ttggtggaaggactaattagtgtat-atttgctgagatataaataa 30130505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 211 - 571
Target Start/End: Complemental strand, 30134153 - 30133799
Alignment:
Q  211 cctcatcatttgagctagcttttgggatgaaatccaagcttatttcacattttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatg 310  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30134153 cctcatcatttgagctaacttttgggatgagatccaagcctatttaacattttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatg 30134054  T
Q  311 aatcaaaatttgaacaattgaatctcattaccatatttcattataattcaaaagaagagtacaagatatcaattgtgggatttgttgtaataattaaagc 410  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  30134053 aatcaaaatttgaacaattgaatctcattacc--atttcattataattcaaaagaagagtacaagataacaattgtggggtttgttgtaataattaaagc 30133956  T
Q  411 atagctttgttactctctatgcctatggaattagatcaaatccgcagttaattaaggtaaagcagttttcttgagtaagttgtccttattgtaatatgaa 510  Q
    |||||||||||||  ||||||||||||||   ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  30133955 atagctttgttacgttctatgcctatgga---agatcaaatccgcagttaattaaagtaaagcagtttttttgactaagttgtccttaatgtaatatgaa 30133859  T
Q  511 tttggtggaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgtt 571  Q
    |||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  30133858 tttgatggaaggacaaattagtgtatg-tttgttgagatataaataaatacgaatattgtt 30133799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 30141870 - 30141545
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgttgtttct 117  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  30141870 catccaaatttcaataatgatgtatgttcatggttttcctttcatcagcatatcttatgcttttgttaggcctgttgtttaattaatatatgttgttttt 30141771  T
Q  118 gttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatc 217  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||| ||||||||  ||||||||||||||||||||||||||||    
T  30141770 gttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatc 30141672  T
Q  218 atttgagctagcttttgggatgaaatccaagcttatttcacattttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaatcaaa 317  Q
    |||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30141671 atttgagctaacttttgggatgagatccaagcctatttaacattttcaagtaatcaagaaaattgtacaataatacaatgaggtaaattgatgaatcaaa 30141572  T
Q  318 atttgaacaattgaatctcattaccat 344  Q
    |||||||||||||||||||||||||||    
T  30141571 atttgaacaattgaatctcattaccat 30141545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 490 - 664
Target Start/End: Complemental strand, 30055517 - 30055345
Alignment:
Q  490 ttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgttgaaaatgtataattaata 589  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||   ||||||||||    
T  30055517 ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttt-gctgagaaataaataaatacgaatcttgttgaaaaccgataattaata 30055419  T
Q  590 ctatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccctgcaatgcagtatgtg 664  Q
    |||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  30055418 ctatctcaatattaaaaaatgagaaataatttgagac-aaaatattctaaacatgaccttgcaatgtagtatgtg 30055345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 481 - 664
Target Start/End: Complemental strand, 30183025 - 30182844
Alignment:
Q  481 ttgagtaagttgtccttattgtaatatgaatttggtggaaggactaattagtgtatgttttgctgagatataaataaatacgaatattgttgaaaatgta 580  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||||||| ||||| |||||||| ||||||  |     
T  30183025 ttgactaaattgtccttattgtaatatgaatttggtggaaggactaattagtgtatgatg-gagaagatataaaaaaataagaatattgatgaaaaactg 30182927  T
Q  581 taattaatactatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccctgcaatgcagtatgtg 664  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  30182926 taattaatactatctgaatattaaaaaataggaaataatttgagac-aaaatattctaaacacgaccttgcaatgcagtatgtg 30182844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 549 - 679
Target Start/End: Complemental strand, 30130157 - 30130033
Alignment:
Q  549 tataaataaatacgaatattgttgaaaatgtataattaatactatctgaatattcaaaaatgggaaataatttgagacgaaaatattctaaacatgaccc 648  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  30130157 tataaataaatacgaatattgttgaaaacttataattaatactatctgaatattcagaaatgggaaataatttgagacg-aaatattctaaacatgaccc 30130059  T
Q  649 tgcaatgcagtatgtgaaaaatattcagcat 679  Q
         |||||||| |||||||||||||||||    
T  30130058 -----tgcagtatctgaaaaatattcagcat 30130033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 30077306 - 30077190
Alignment:
Q  260 ttttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatatttcattataattc 359  Q
    ||||| |||||||||| ||| || ||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||| |||  |||||||||||||    
T  30077306 ttttctagtaatcaaggaaactgcacaattagacaatgaggtaa-ttgattaatcaaaatttgaacaatt-aatctcattatcat--ttcattataattc 30077211  T
Q  360 aaaagaagagtacaagatatc 380  Q
    |||||||||||||||| ||||    
T  30077210 aaaagaagagtacaagctatc 30077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 50197100 - 50197207
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagct 230  Q
    |||||||| ||| ||||||||||| ||||| |||||||||||||||  |  |||||||||||||||||||| | ||||||||||||| ||||| ||||||    
T  50197100 ttgaagttgtttatagtttgttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatcctttgatctagct 50197199  T
Q  231 tttgggat 238  Q
    ||||||||    
T  50197200 tttgggat 50197207  T

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Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 11047446 - 11047562
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagct 230  Q
    |||||||| |||||||||||||    |||| ||||||||||||||  || ||||||||||||||||||| ||||||||||||||||| ||||||||| ||    
T  11047446 ttgaagttgtttgtagtttgtttctagtcccacattgctcaggtttgtgcgctgttgagtgtataaatacgcttgagtaccctcatcctttgagctaact 11047545  T
Q  231 tttgggatgaaatccaa 247  Q
    |||  ||||| ||||||    
T  11047546 tttatgatgagatccaa 11047562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 30055828 - 30055737
Alignment:
Q  22 caaatttcaataatgatgt--atgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgtt 111  Q
    |||||||||||||||||||  || | |||||||||  |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  30055828 caaatttcaataatgatgtgtatatgcatggtttgcttttcatcagcatgtcttatgcttttgttaggcctgttgtttaattaatatatgtt 30055737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 50196835 - 50196977
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||| ||||||| ||||||||||||| ||||||| ||| ||||| |||||||||| |||   |  |||||||||||||||||||| || | |||||||||    
T  50196835 tgtttaagttggatttgaagttatttctagtttgatatttgtcc-acattgctcatgtttccgtactgttgagtgtataaatatgtttaaataccctcat 50196933  T
Q  217 catttgagctagcttttgggatgaaatccaagcttatttcacat 260  Q
    | ||||||||| |||||||||||| |||||| | ||||| ||||    
T  50196934 cctttgagctaacttttgggatgagatccaaacctatttaacat 50196977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 30049201 - 30049108
Alignment:
Q  284 acaattatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccatatttcattataattcaaaagaagagtacaagatatc 380  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||  || ||||||||||| ||||||||||||||| |||||    
T  30049201 acaattagacaatgaggtaa-ttgatgaatcaaaatctgaacaattgaatcttattacc--atctcattataatttaaaagaagagtacaatatatc 30049108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 22312204 - 22312311
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatca 218  Q
    |||||||||||||||||||| |||||||||||||||  |||  ||| ||||||| ||||| | ||||||||| |||||||||| ||||||| || |||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtctcacaatgctcagtttctt-gactgttgagtatataaatatgtttgagtatccacatca 22312302  T
Q  219 tttgagcta 227  Q
    |||||||||    
T  22312303 tttgagcta 22312311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 30079515 - 30079435
Alignment:
Q  36 gatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgttgtttc 116  Q
    ||||||||| ||||||||| |||||| |||||| |||||||| |||||||||| |||||||||||||||||||||| ||||    
T  30079515 gatgtatgtgcatggtttgcctttcaccagcatttcttatgcctttgttaggcctgttgtttaattaatatatgttttttc 30079435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 30062576 - 30062486
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttgtctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatat 108  Q
    |||||||| || | ||||||||||||| ||||||||  ||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||    
T  30062576 catccaaaattgagtaatgatgtatgtgcatggtttacctttcatcagcatgtcttatgcttttgataggcttgttgtttaactaatatat 30062486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 20490917 - 20490995
Alignment:
Q  183 tgttgagtgtataaatatgcttgagtaccctcatcatttgagctagc-ttttgggatgaaatccaagcttatttcacat 260  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| ||||||||| |||| ||||    
T  20490917 tgttgagtgtataaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaagctcatttaacat 20490995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 30077362 - 30077301
Alignment:
Q  56 ctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgttgtttct 117  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| |||||    
T  30077362 ctttcatcagcatttcttatgcttgtgttaggcctgttgtttaattaatatatgttttttct 30077301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30463163 - 30463232
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatgg-tttgtctttcatcagcatatcttatgcttttgttag 86  Q
    ||||||||||||||||||||||||||  ||||| |||| ||||||||||||| |||||||||||||||||    
T  30463163 catccaaatttcaataatgatgtatgagcatggttttgcctttcatcagcatgtcttatgcttttgttag 30463232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 30079439 - 30079325
Alignment:
Q  260 ttttcaagtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaa---tcaaaatttgaacaattgaatctcattaccatatttcattataa 356  Q
    |||||||||||||||| |||||| ||||||| ||||   ||||| ||||||||   ||||||||| ||||||||||| ||||||||  ||||||||||||    
T  30079439 ttttcaagtaatcaaggaaattgcacaattagacaacagggtaa-ttgatgaagactcaaaatttaaacaattgaatttcattacc--atttcattataa 30079343  T
Q  357 ttcaaaagaagagtacaa 374  Q
    ||||| | ||||||||||    
T  30079342 ttcaacaaaagagtacaa 30079325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 20982706 - 20982647
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttc 176  Q
    |||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  20982706 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctacattgctcaggttc 20982647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 30171590 - 30171513
Alignment:
Q  266 agtaatcaagaaaattgtacaattatacaatgaggtaaattgatgaatcaaaatttgaacaattgaatctcattaccat 344  Q
    |||||||||| |||||| |||||||  ||  ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  30171590 agtaatcaaggaaattgcacaattaggcatcgaggtaa-ttgatgaatcaaaatttgaactattgaatctcattaccat 30171513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 30171651 - 30171596
Alignment:
Q  56 ctttcatcagcatatcttatgcttttgttaggcatgttgtttaattaatatatgtt 111  Q
    ||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||    
T  30171651 ctttcatcagcatgtgttatgcttttgttaggcctgttgtttaactaatatatgtt 30171596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 20995589 - 20995470
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||| ||||| ||||||||||||||| | | | ||||||||||  |  ||    ||||||||||||||||||| ||||||||||||||    
T  20995589 tgttgaagttggttttaaagttgtttgtagtttgttatttattccacattgctcatatggttcca-tgttgagtgtataaatatggttgagtaccctcat 20995491  T
Q  217 catttgagctagcttttgggat 238  Q
      ||| ||||||||| ||||||    
T  20995490 -tttttagctagcttctgggat 20995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 30072097 - 30072053
Alignment:
Q  72 ttatgcttttgttaggcatgttgtttaattaatatatgttgtttc 116  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  30072097 ttatgcttttgttaggcctgttgtttaattaatatatgttttttc 30072053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 30055718 - 30055659
Alignment:
Q  377 tatcaattgtgggatttgttgtaataattaaagcatagctttgttactctctatgcctatggaa 440  Q
    ||||||||||||| ||||||| |||||    ||||||||||||||||||| |||||||||||||    
T  30055718 tatcaattgtggggtttgttggaataa----agcatagctttgttactctgtatgcctatggaa 30055659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 36236638 - 36236569
Alignment:
Q  177 ttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaa 247  Q
    |||| ||||||| |||||||||||| ||||| ||| |||||||||||| || |||||||||||| ||||||    
T  36236638 ttggactgttgaatgtataaatatgtttgagcacc-tcatcatttgagttatcttttgggatgacatccaa 36236569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 30072268 - 30072232
Alignment:
Q  18 catccaaatttcaataatgatgtatgttcatggtttg 54  Q
    ||||||||||||||||||||||||||| |||||||||    
T  30072268 catccaaatttcaataatgatgtatgtgcatggtttg 30072232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 22312417 - 22312512
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccc 212  Q
    |||||||||||||||| || ||||||||||||||||||  ||   ||||| |||| |||     | ||||||||||||||||||| ||||||||||    
T  22312417 tgttgaagttggttttaaaattatttgtagtttgttattagtttcacattcctcatgtttccatgatgttgagtgtataaatatgtttgagtaccc 22312512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 20491068 - 20491201
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatca 218  Q
    |||||||||||||||||||| ||| |||||||||||   ||  | ||||||| |||||      |||||||||||||||||| | |||| | | | |||     
T  20491068 ttgaagttggttttgaagttttttttagtttgttattaatctcatattgctctggttccca---tgttgagtgtataaatattcatgagcatcataatcc 20491164  T
Q  219 tttgagctagcttttgggatgaaatccaagcttattt 255  Q
     |||||||| |||||||||||| ||||||||| ||||    
T  20491165 gttgagctaccttttgggatgagatccaagctcattt 20491201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 20982226 - 20982174
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgct 169  Q
    |||||||||||||||| || || ||||||||||||||| || ||||| |||||    
T  20982226 tgttgaagttggttttaaaattgtttgtagtttgttatttgacctacgttgct 20982174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 30048840 - 30048808
Alignment:
Q  405 taaagcatagctttgttactctctatgcctatg 437  Q
    |||||||||||||||||||| ||||||||||||    
T  30048840 taaagcatagctttgttactttctatgcctatg 30048808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 36746873 - 36746782
Alignment:
Q  110 ttgtttctgttgaagttggttttgaag--ttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaata 199  Q
    |||||| ||||||||||||||||||||  || ||| ||||||||| |  || | ||||||||||| ||||  |||||| || ||||||||||    
T  36746873 ttgtttatgttgaagttggttttgaagttttttttttagtttgttgttagttccacattgctcagattctcaggctgtcgaatgtataaata 36746782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 2912094 - 2911971
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||| |||| |||| ||||||||||||||| ||||| |||| | |||||||| |||||| ||||||||||||||||| |||| |||| ||||    
T  2912094 tgttgaagttggctttggagttgtttgtagtttgttatttgtcccacatggatcaggttcctgggctattgagtgtataaatatgtttgaataccttcat 2911995  T
Q  217 catttgagctagcttttgggatga 240  Q
    |||||||| |||  ||||||||||    
T  2911994 catttgagttagggtttgggatga 2911971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 8745978 - 8745860
Alignment:
Q  142 tgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaa 241  Q
    ||||||||||||||||||||||||||  |||||||  || |||||||||||||||||||| | ||||| ||||||| ||| ||||| ||||||||||||     
T  8745978 tgtagtttgttatgtgtcctacattgtacaggttcccggactgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgag 8745879  T
Q  242 atccaagcttatttcacat 260  Q
    ||||||||| |||| ||||    
T  8745878 atccaagctcatttaacat 8745860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 5473272 - 5473402
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||||||||| ||||||||||||||| |||  || |||||||| ||||| ||| || | | ||||||||||||  |||||||||| ||    
T  5473272 tgttgaagttggttttgaagttgtttgtagtttgttatttgttatatattgctcaagttctcgggttgctaaatgtataaatatgtatgagtacccttat 5473371  T
Q  217 catttgagctagcttttgggatgaaatccaa 247  Q
    | ||| || |||||||| | |||| ||||||    
T  5473372 cttttaagttagcttttagaatgagatccaa 5473402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 23972397 - 23972534
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    ||||||||||| |||| || || ||||||||||||||| | ||| ||||||||||| |||||  ||||||||   |||||||||| ||||||||||||||    
T  23972397 tgttgaagttgattttaaaattgtttgtagtttgttatttttcccacattgctcag-ttcttatgctgttgaacatataaatatgtttgagtaccctcat 23972495  T
Q  217 catttgagctagcttttgggatgaaatccaagcttattt 255  Q
    | |||||| || ||||||| |||| || ||||| |||||    
T  23972496 cctttgagttaacttttggaatgagattcaagcctattt 23972534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 41243342 - 41243214
Alignment:
Q  120 tgaagttggtttt-gaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatca 218  Q
    ||||||||||||| || ||| ||||||||||||||| ||||| | |||||| ||||| |  || ||| |||| ||||||||| |||||||| |||||||     
T  41243342 tgaagttggtttttgacgttgtttgtagtttgttatttgtcccatattgcttaggttttcaggttgtggagtctataaatatacttgagtaacctcatcc 41243243  T
Q  219 tttgagctagcttttgggatgaaatccaa 247  Q
     |||||||| |||||||||||| ||||||    
T  41243242 gttgagctaacttttgggatgagatccaa 41243214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 8745789 - 8745657
Alignment:
Q  117 tgttgaagttggttttgaagttatttgt--agtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctc 214  Q
    |||| ||||||||||||||||| |||||  |||||||||| | ||||||||| |||| |||| | |||| |||||||| |||||||  ||||||||||||    
T  8745789 tgttaaagttggttttgaagttgtttgtgtagtttgttatttttcctacattactcatgttcctaggctattgagtgtctaaatattgttgagtaccctc 8745690  T
Q  215 atcatttgagctagcttttgggatgaaatccaa 247  Q
     || ||| ||||| ||||| || ||| ||||||    
T  8745689 gtcctttaagctaacttttagggtgagatccaa 8745657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 35035353 - 35035253
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    ||||||||||  |||| ||||| ||| ||||| ||||| ||| | |||||||||||||| |  |  ||||||||||||||||||| ||||||| ||||||    
T  35035353 tgttgaagttaattttaaagttgtttatagttagttatttgttccacattgctcaggttttcagtttgttgagtgtataaatatgtttgagtagcctcat 35035254  T
Q  217 c 217  Q
    |    
T  35035253 c 35035253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 36496333 - 36496230
Alignment:
Q  157 gtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagcttatttc 256  Q
    |||||| |||||||||||||   ||||||||  ||||||||| || ||  | |||||||||  ||||||||||||||||||||| || |||||  |||||    
T  36496333 gtcctaaattgctcaggttccccggctgttggatgtataaatctgtttaggcaccctcatccattgagctagcttttgggatgagattcaagcccatttc 36496234  T
Q  257 acat 260  Q
    ||||    
T  36496233 acat 36496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 35035535 - 35035466
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatg 201  Q
    |||||||| ||||||||||||||| |||| | ||||| || |||||  ||| |||||||||||||||||||    
T  35035535 ttgaagttgtttgtagtttgttatttgtcattcattgttcgggttc-cgggatgttgagtgtataaatatg 35035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 8402264 - 8402121
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||| ||||| ||||||||||||| |   | | ||||  |||||||| | ||||||| ||||||||||||||| |||||||||||| |    
T  8402264 tgttgaagttggttttaaagttgtttgtagtttgttgttacttccacatctctcaggttttcgggctgtcgagtgtataaatatgtttgagtaccctcct 8402165  T
Q  217 catttgagctagcttttgggatgaaatccaagcttatttcacat 260  Q
    | ||||||||| |||||||||||||||||||  |||||| ||||    
T  8402164 cctttgagctaacttttgggatgaaatccaaatttatttaacat 8402121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 8402085 - 8401992
Alignment:
Q  167 gctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagcttatttcacat 260  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||| ||||||| |||| |||||| ||||||| ||||    
T  8402085 gctcaggttctcgggctgtcgagtgtataaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacat 8401992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 28432068 - 28431959
Alignment:
Q  146 gtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatcc 245  Q
    ||||||||| ||||  |||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||| ||||||| |    
T  28432068 gtttgttatttgtctcacattgcttaggttcctgggctgctgagtgtataaatatgcttgagtatcctcatcctttaaactagcttttggaatgaaattc 28431969  T
Q  246 aagcttattt 255  Q
    |||| |||||    
T  28431968 aagcctattt 28431959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 6423931 - 6424061
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggtt-cttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagc 229  Q
    |||||||| | ||||||||||||| ||||  |||||| ||| ||| ||   ||||||||||||||||||||| ||||||| | ||||| ||| ||||||     
T  6423931 ttgaagttgtctgtagtttgttatttgtctcacattgttcaagtttctccagctgttgagtgtataaatatgtttgagtatcatcatcttttaagctagt 6424030  T
Q  230 ttttgggatgaaatccaagcttatttcacat 260  Q
    |||| |||||| || ||| ||||||| ||||    
T  6424031 ttttaggatgagattcaatcttatttaacat 6424061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 42193778 - 42193723
Alignment:
Q  168 ctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttga 223  Q
    ||||||||| | || ||||||||||||||||||| ||||||||||| |||||||||    
T  42193778 ctcaggttcctaggttgttgagtgtataaatatgtttgagtacccttatcatttga 42193723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 31540358 - 31540323
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgtt 152  Q
    |||||||||||||||||||||| |||||||||||||    
T  31540358 tgttgaagttggttttgaagttgtttgtagtttgtt 31540323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 12835709 - 12835659
Alignment:
Q  192 tataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaa 242  Q
    ||||||||||||||||||| ||| |||||||||  ||||||| ||||||||    
T  12835709 tataaatatgcttgagtactctcctcatttgagtcagcttttaggatgaaa 12835659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 36165594 - 36165462
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||| ||||||||||| |||||| ||||||    |||| |||||||| ||||||  ||| ||||||||||||||| ||| ||||||||||||||    
T  36165594 tgttgaagttagttttgaagttgtttgtaatttgtttctagtcccacattgctaaggttcccgggttgttgagtgtataaagatgtttgagtaccctcat 36165495  T
Q  217 catttgagctagcttttgggatgaaatccaagc 249  Q
    | |||| ||||| ||||||||||| ||||||||    
T  36165494 cttttgtgctagattttgggatgagatccaagc 36165462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 1460392 - 1460524
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||| ||| ||  ||||||||||||||| ||||||||  ||||    
T  1460392 tgttcaagttggttttgaagttgtttgtagtttgttatttgtctcacattgctcaggttctcgggttg-ggagtgtataaatatgtttgagtactttcat 1460490  T
Q  217 -catttgagctagcttttgggatgaaatccaagc 249  Q
     | |||||||||| |||||| |||| ||||||||    
T  1460491 acgtttgagctagtttttggaatgagatccaagc 1460524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 23564418 - 23564283
Alignment:
Q  113 tttctgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccc 212  Q
    ||||||| ||||||  |||||||||| ||||||||||||||| ||||| |||||||||||||| |  || |||||||||||||| |||| || || |||     
T  23564418 tttctgtggaagttaattttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttgagtgtataagtatgttttagaacct 23564319  T
Q  213 tcatcatttgagctagcttttgggatgaaatccaag 248  Q
    ||||| ||| || |||| |||||||||| |||||||    
T  23564318 tcatcttttaagttagcatttgggatgagatccaag 23564283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 11784979 - 11785065
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatc 217  Q
    |||||||| ||||||||||||| |  |||| ||||| |||||||||| || |||||||||||||||||||| |||||||||||||||    
T  11784979 ttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatc 11785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 18523345 - 18523203
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||||||||| |||||||||||||      || ||||||||||||||   ||| ||||||   |||||||||| ||||||||||||||    
T  18523345 tgttgaagttggttttgaagttgtttgtagtttgtttctaaccccacattgctcaggtttccgggttgttgaacatataaatatgtttgagtaccctcat 18523246  T
Q  217 catttgagctagcttttgggatgaaatccaagcttatttcaca 259  Q
    | |||||| || |||||||||  | |||||||| |||||||||    
T  18523245 cctttgaggtatcttttgggagcagatccaagcctatttcaca 18523203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 23564665 - 23564547
Alignment:
Q  142 tgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaa 241  Q
    ||||||||||||| |||| |||||||  |||||||  || || ||||||||  || |||||||||||||||||||| ||||||||| ||||||||||||     
T  23564665 tgtagtttgttatttgtcttacattgtccaggttcccggactattgagtgtgcaagtatgcttgagtaccctcatcctttgagctaacttttgggatgag 23564566  T
Q  242 atccaagcttatttcacat 260  Q
    |||||| | ||||| ||||    
T  23564565 atccaaacctatttaacat 23564547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 55240630 - 55240694
Alignment:
Q  183 tgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaa 247  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  55240630 tgttgagtatataaatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 55240694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 857133 - 857024
Alignment:
Q  145 agtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatc 244  Q
    |||||||| | |||||||||||||||| ||||| ||    |||| |||||||||||||||| || ||||| ||||||||||| ||||||||||||| | |    
T  857133 agtttgttgtatgtcctacattgctcaagttctcggataattgattgtataaatatgcttgggtcccctcctcatttgagcttgcttttgggatgataac 857034  T
Q  245 caagcttatt 254  Q
    ||| ||||||    
T  857033 caaacttatt 857024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 36165808 - 36165714
Alignment:
Q  118 gttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctca 215  Q
    ||||||| | ||||||||||| ||||||||||||| |  |||| |||||||| ||||||   |||| ||||||||||||||||| |||||||||||||    
T  36165808 gttgaaggttgttttgaagttgtttgtagtttgttgttagtcccacattgcttaggttc---ggctattgagtgtataaatatgtttgagtaccctca 36165714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 55240370 - 55240494
Alignment:
Q  123 agttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttg 222  Q
    |||||||||| ||||| ||||||||||||| |  ||  || |||||||||||| |  || |||||||||||  ||||| |||||||| ||||||| ||||    
T  55240370 agttggttttaaagttgtttgtagtttgttgttagttttatattgctcaggttttcaggttgttgagtgta--aatatacttgagtatcctcatcctttg 55240467  T
Q  223 agctagcttttgggatgaaatccaagc 249  Q
    || ||||||||||||||| || |||||    
T  55240468 agttagcttttgggatgagattcaagc 55240494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 9928893 - 9928751
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatg----tgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccc 212  Q
    |||||||||| ||||||||||| |||||||||||||||     | ||| ||||||||||| ||   ||| ||||||||||||||||||| ||||||||||    
T  9928893 tgttgaagttagttttgaagttgtttgtagtttgttattaatttatcccacattgctcagatttccgggttgttgagtgtataaatatgtttgagtaccc 9928794  T
Q  213 tcatcatttgagctagcttttgggatgaaatccaagcttattt 255  Q
    | ||  ||| |||||  ||||||||| | || ||||| |||||    
T  9928793 taattttttaagctaatttttgggattagatacaagcctattt 9928751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 23564204 - 23564106
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||| |||||  |||||||||||||| | ||| |||||||| |  ||  ||  ||||||||||||||| |||||||||||||||||||    
T  23564204 tgttgaagttggttttaaagttgattgtagtttgttatttatcccacattgcttaattttctg--ctgttgagtgtataagtatgcttgagtaccctcat 23564107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 9929105 - 9928990
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||| ||||||||||||   |||||||||||| | | ||| |||| ||||||| | ||   ||||||| |||||||||| ||||||| ||||||    
T  9929105 tgttgaagttagttttgaagtta---gtagtttgttattttttctatattgttcaggttttcggatcgttgagtatataaatatgtttgagtatcctcat 9929009  T
Q  217 catttgagctagcttttgg 235  Q
    | ||||||||| |||||||    
T  9929008 cttttgagctaacttttgg 9928990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 19680399 - 19680323
Alignment:
Q  179 gggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagcttattt 255  Q
    ||||||| || ||||||||||||||||||| ||||| || ||||||||| |||||||||| | |||||||| |||||    
T  19680399 gggctgtcgattgtataaatatgcttgagtcccctcctcttttgagctaacttttgggataagatccaagcatattt 19680323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 18523075 - 18523012
Alignment:
Q  192 tataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagcttattt 255  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||| |||| ||||||||| ||||    
T  18523075 tataaatatgcttgagtaccatcatcctttgagcgagcttttggtatgagatccaagctcattt 18523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 36166023 - 36165893
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||| || |||||||||| |||||||||| || |  |||  |||||  ||||| | | ||| ||||||||||||||| ||| ||||| ||||||||    
T  36166023 tgttgaagatgattttgaagttgtttgtagtttatttttagtctcacattattcaggctttcgggatgttgagtgtataaacatgtttgagcaccctcat 36165924  T
Q  217 catttgagctagcttttgggatgaaatccaa 247  Q
    | ||| ||||| |||||| ||||| ||||||    
T  36165923 cctttaagctaacttttgcgatgagatccaa 36165893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 16413067 - 16412982
Alignment:
Q  163 cattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaag 248  Q
    |||||||||| ||||  || |||||||||||||||| ||||||  || ||||||| |||||||| ||||||| ||||| |||||||    
T  16413067 cattgctcagtttctcaggatgttgagtgtataaatgtgcttggatatcctcatcctttgagctggcttttgagatgagatccaag 16412982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 53089910 - 53089795
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||| | |||||||||||   ||||||||||| |  |||| || || |||||||||   | ||||| |||||||||||||| ||||||||||||||    
T  53089910 tgttgaaggtagttttgaagttgcatgtagtttgttgttagtcccactttactcaggttcccagactgttaagtgtataaatatgtttgagtaccctcat 53089811  T
Q  217 catttgagctagcttt 232  Q
    | ||  ||||||||||    
T  53089810 ccttaaagctagcttt 53089795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 2346419 - 2346484
Alignment:
Q  190 tgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagcttattt 255  Q
    ||||||||||||||| | | ||||| || || ||||||||||||||||||| ||| ||||||||||    
T  2346419 tgtataaatatgcttcaatcccctcctccttcgagctagcttttgggatgagatctaagcttattt 2346484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 8837180 - 8837128
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgct 169  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||  ||||||||    
T  8837180 tgttgaagtcggttttgaagttatttgtagtatgttatttgtctcacattgct 8837128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 54137210 - 54137110
Alignment:
Q  134 aagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagctttt 233  Q
    ||||| |||||||||||||  |  ||||| ||||||||||||  | || |||||||||||||||| || ||| | ||||||| | |||||| ||||||||    
T  54137210 aagttgtttgtagtttgtttggactcctaaattgctcaggtttctaggttgttgagtgtataaatctgtttgggcaccctcaccctttgagatagctttt 54137111  T
Q  234 g 234  Q
    |    
T  54137110 g 54137110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 36165247 - 36165124
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    ||||||||||||||||||| || |||||||||||||||  ||   |  || ||||||||| || | |||||||  |||||||||| ||||||| | ||      
T  36165247 tgttgaagttggttttgaaattgtttgtagtttgttattggtatcaagttactcaggttcctgagttgttgagcatataaatatgtttgagtatcttctc 36165148  T
Q  217 catttgagctagcttttgggatga 240  Q
      |||||||||| |||||||||||    
T  36165147 tctttgagctagtttttgggatga 36165124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 37927656 - 37927695
Alignment:
Q  115 tctgttgaagttggttttgaagttatttgtagtttgttat 154  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  37927656 tctgttgaagttagttttgaagttgtttgtagtttgttat 37927695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23564464 - 23564418
Alignment:
Q  129 ttttgaagttatttgtagtttgttatgtgtcctacattgctcaggtt 175  Q
    |||||||||| ||||||||||||||| ||||| |||||| |||||||    
T  23564464 ttttgaagttgtttgtagtttgttatttgtcccacattgatcaggtt 23564418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 30525160 - 30525287
Alignment:
Q  122 aagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcattt 221  Q
    |||||| |||||||||| ||||||||||||||| ||  |||||||  | ||||||| | | |||| |||||||||||||| |||||||| |||||  |||    
T  30525160 aagttgcttttgaagttgtttgtagtttgttatttgctctacattatttaggttctagtgttgtttagtgtataaatatgtttgagtactctcattcttt 30525259  T
Q  222 gagctagcttttgggatgaaatccaagc 249  Q
    ||||||||||||||||||| || |||||    
T  30525260 gagctagcttttgggatgagatacaagc 30525287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 30525372 - 30525497
Alignment:
Q  120 tgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcat 219  Q
    ||||||| ||||||||||| |  |||||||||||| ||||| |||||| |||||||| || ||| ||||||||||||||||| ||||||||| ||||| |    
T  30525372 tgaagttcgttttgaagttgtc-gtagtttgttatttgtcc-acattgttcaggttcctgagctattgagtgtataaatatgtttgagtaccttcatctt 30525469  T
Q  220 ttgagctagcttttgggatgaaatccaa 247  Q
    |||||||| ||||| |||||| ||||||    
T  30525470 ttgagctacctttttggatgagatccaa 30525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 32884668 - 32884537
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||||||  | || |||||||||||| ||||  ||||||||||||||| |||| |||  ||||| |||||||| ||||||| ||||||    
T  32884668 tgttgaagttggttttgaaaatgttcgtagtttgttatttgtctcacattgctcaggttcatgggatgtcaagtgtttaaatatgtttgagtatcctcat 32884569  T
Q  217 catttgagctagcttttgggatgaaatccaag 248  Q
    | ||| || ||| |||||||||||||| ||||    
T  32884568 cctttaagttagtttttgggatgaaattcaag 32884537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 28883793 - 28883667
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||| ||||||||||||||||| ||||||||||||| |  |||| |    ||||||||| | ||| |||| |||||||||||||| ||||||||||||||    
T  28883793 tgttaaagttggttttgaagttgtttgtagtttgttgttagtccca----gctcaggttttcgggttgttaagtgtataaatatgtttgagtaccctcat 28883698  T
Q  217 catttgagctagcttttgggatgaaatccaa 247  Q
      |  ||| ||||||||| ||||| ||||||    
T  28883697 tctccgaggtagcttttgagatgagatccaa 28883667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 32879835 - 32879712
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||| ||||||||||||  | ||  ||||||||||| ||||  |||||| |||||||| |||| |||  ||||| |||||||| | ||||||||||||    
T  32879835 tgttgatgttggttttgaaaatgttcctagtttgttatttgtctcacattgttcaggttcatgggatgtcaagtgtttaaatatgttcgagtaccctcat 32879736  T
Q  217 catttgagctagcttttgggatga 240  Q
    | ||| || ||| |||||||||||    
T  32879735 cctttaagttagtttttgggatga 32879712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 27461233 - 27461302
Alignment:
Q  108 tgttgtttctgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttct 177  Q
    |||||||  |||||||||||||||||||||| | ||||||||||||| ||||| |||||| ||| |||||    
T  27461233 tgttgttattgttgaagttggttttgaagttgtatgtagtttgttatctgtcccacattgttcaagttct 27461302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 33199666 - 33199724
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttct 177  Q
    |||||||||||||||||||| | |||| |||||||| |||| |||| ||||||||||||    
T  33199666 ttgaagttggttttgaagttgtctgtattttgttatttgtcttacactgctcaggttct 33199724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 12704268 - 12704313
Alignment:
Q  190 tgtataaatatgcttgagtaccctcatcatttgagctagcttttgg 235  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  12704268 tgtataaatatgtttgagtaccttcatcttttgtgctagcttttgg 12704313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 42160217 - 42160281
Alignment:
Q  183 tgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaa 247  Q
    |||||||||||||||||||  ||||||  || ||| |||||||||  |||| |||||||||||||    
T  42160217 tgttgagtgtataaatatgtctgagtatacttatcttttgagctaaattttaggatgaaatccaa 42160281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 43829953 - 43829820
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||| |||||  ||||||||||||    |||| |||||||||||||||   |   |||||||||| ||||||||||||||||||||||    
T  43829953 tgttgaagttggttttcaagttccttgtagtttgtttctagtcccacattgctcaggttcccagatcgttgagtgtagaaatatgcttgagtaccctcat 43829854  T
Q  217 catttgagctagcttttgggatgaaatccaagct 250  Q
    |  ||||||||||| ||||||||| ||| |||||    
T  43829853 ccattgagctagctgttgggatgagatcaaagct 43829820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 43829739 - 43829620
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcagg-ttcttgggctgttgagtgtataaatatgcttgagtaccctca 215  Q
    ||||||||||||||||||||||  ||||||||||||    |||| |||||| ||||| |||  || |||||||||||||||||||| ||||||| |||||    
T  43829739 tgttgaagttggttttgaagttccttgtagtttgtttctagtcccacattgttcaggattcccggactgttgagtgtataaatatgtttgagtatcctca 43829640  T
Q  216 tcatttgagctagcttttgg 235  Q
    |  |||||||||||||||||    
T  43829639 ttctttgagctagcttttgg 43829620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 41470116 - 41470233
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagct 230  Q
    |||||||| |||| ||||| ||| | |||| || |||||||||||||  || ||||| |||||||||| ||| ||   ||||||||| ||||| ||||||    
T  41470116 ttgaagttgtttggagtttcttaggagtcccacgttgctcaggttctcaggatgttgggtgtataaatctgcctggacaccctcatcctttgaactagct 41470215  T
Q  231 tttgggatgaaatccaag 248  Q
    |||| ||||| |||||||    
T  41470216 tttgagatgagatccaag 41470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 4762566 - 4762500
Alignment:
Q  129 ttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataa 196  Q
    |||||||||| ||||||||||||||| ||| | |||| ||| |||||||||| || ||||||||||||    
T  4762566 ttttgaagttgtttgtagtttgttatttgttc-acatcgctaaggttcttggactattgagtgtataa 4762500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 36201865 - 36201906
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcc 160  Q
    |||||||||||||||||||| ||| ||||||||||| |||||    
T  36201865 ttgaagttggttttgaagttgtttatagtttgttatttgtcc 36201906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 10742184 - 10742315
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgg-gctgttgagtgtataaatatgcttgagtaccctca 215  Q
    |||||||||| ||||||||||| |||||| |||||||| | ||| |||||| ||||||||   | | |||||| |||||||||||| ||| ||||||| |    
T  10742184 tgttgaagttagttttgaagttgtttgtattttgttatttatcccacattgttcaggttccccgagttgttgaatgtataaatatgtttgggtaccctaa 10742283  T
Q  216 tcatttgagctagcttttgggatgaaatccaa 247  Q
    ||||||||  ||||||||||||||| ||||||    
T  10742284 tcatttgatttagcttttgggatgagatccaa 10742315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 6728573 - 6728656
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatat 200  Q
    |||||||||||||||| ||||| ||| ||||||||||| ||||  |||||| ||||||| ||||| |||| |||||||||||||    
T  6728573 tgttgaagttggttttaaagttgtttatagtttgttatttgtctcacattgttcaggtttttgggttgttaagtgtataaatat 6728656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 8535688 - 8535595
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtac 210  Q
    ||||||||||||||||||| || ||| ||||||||| |  |||| || ||||||| ||||  | || ||||||||||||||||||||| |||||    
T  8535688 tgttgaagttggttttgaatttgtttatagtttgtttttagtcccacgttgctcatgttccagagccgttgagtgtataaatatgcttcagtac 8535595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 11339957 - 11340007
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattg 167  Q
    ||||| |||||||||| ||||| ||||||||||||||| |||| |||||||    
T  11339957 tgttgtagttggttttaaagttgtttgtagtttgttatttgtcttacattg 11340007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 33104580 - 33104617
Alignment:
Q  115 tctgttgaagttggttttgaagttatttgtagtttgtt 152  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  33104580 tctgttgaagttgattttgaagttgtttgtagtttgtt 33104617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 33104647 - 33104707
Alignment:
Q  189 gtgtataaatatgcttgagtaccctcatc--atttgagctagcttttgggatgaaatccaa 247  Q
    |||||||||||||||||| ||||||||||  |||||| |||  ||||||||||| ||||||    
T  33104647 gtgtataaatatgcttgaataccctcatccaatttgatctaatttttgggatgagatccaa 33104707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 8543089 - 8543041
Alignment:
Q  162 acattgctcaggttcttgggctgttgagtgtataaatatgcttgagtac 210  Q
    |||||||||| ||||| | || |||||||||||||||||| ||||||||    
T  8543089 acattgctcatgttctagagccgttgagtgtataaatatgtttgagtac 8543041  T

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Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 117 - 263
Target Start/End: Original strand, 3142872 - 3143018
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||||||||||||||||| | | |||||||| || |  |||| |||| ||||| |||  ||  ||||||| |||||||||||||| ||||||| ||||    
T  3142872 tgttgaagttggttttgaagctgtctgtagtttattgttagtcccacatcgctcaagtttctgaactgttgaatgtataaatatgctcgagtaccttcat 3142971  T
Q  217 catttgagctagcttttgggatgaaatccaagcttatttcacatttt 263  Q
      || ||| ||||||||||||||| |||||| ||||||| |||||||    
T  3142972 tcttcgagttagcttttgggatgacatccaaacttatttaacatttt 3143018  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 3371580 - 3371717
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    ||||||||||||||||| |||| ||| |||||||||    |||  | ||||||| |||||  |  |||||||||||||| | ||||||||||||||||||    
T  3371580 tgttgaagttggttttgtagttgtttatagtttgtttctggtctcatattgctcgggttcc-gaactgttgagtgtatacacatgcttgagtaccctcat 3371678  T
Q  217 catttgagctagcttttgggatgaaatccaagcttattt 255  Q
    | |||||| ||||||||||||||| ||||||||| ||||    
T  3371679 cttttgaggtagcttttgggatgagatccaagctcattt 3371717  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 10645531 - 10645626
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccc 212  Q
    |||||||| ||||||||| ||| ||||||||||||| | ||||| |||| ||||||||||  | | | ||||||||||||||||||||||||||||    
T  10645531 tgttgaagctggttttgaggttgtttgtagtttgttgtttgtcccacatcgctcaggttcccgcggtattgagtgtataaatatgcttgagtaccc 10645626  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 25685668 - 25685788
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcat 216  Q
    |||||| |||| |||||||||  |||| | |||||||| ||||  |||||| |||| ||  || | ||||||||||||||||||| |||| ||| |||||    
T  25685668 tgttgacgttgattttgaagtg-tttgcaatttgttatttgtctcacattgttcagatttctgagttgttgagtgtataaatatgtttgaatactctcat 25685766  T
Q  217 catttgagctagcttttgggat 238  Q
    ||||||||||||||||| ||||    
T  25685767 catttgagctagcttttaggat 25685788  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 12178149 - 12178101
Alignment:
Q  192 tataaatatgcttgagtaccctcatcatttgagctagcttttgggatga 240  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  12178149 tataaatatgtttgagtaccctcatcctttgacctagcttttgggatga 12178101  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 10645792 - 10645842
Alignment:
Q  183 tgttgagtgtataaatatgcttgagtaccctcatcatttgagctagctttt 233  Q
    ||||||||||||||||||| ||||||||||||||| || |||||| |||||    
T  10645792 tgttgagtgtataaatatgtttgagtaccctcatccttagagctatctttt 10645842  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 30602336 - 30602373
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttat 154  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30602336 tgttgaagttggttttgaagttgtttgtagtttgttat 30602373  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 35536910 - 35536789
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatca 218  Q
    |||||||| ||||| ||||| || |||||||||| |  || | ||||| || |||||||    ||||||| |||||||||||| |  |||| ||||||||    
T  35536910 ttgaagttcgttttaaagttgttggtagtttgttgttagttccacattacttaggttctcaaactgttgaatgtataaatatgttcaagtatcctcatca 35536811  T
Q  219 tttgagctagcttttgggatga 240  Q
    |||||| || ||||||||||||    
T  35536810 tttgagttaacttttgggatga 35536789  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 32968600 - 32968509
Alignment:
Q  119 ttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtac 210  Q
    ||||| || ||||||||||| || ||| |||||||| ||| | |||||||||| |||  ||| ||||| ||| |||||||||| ||||||||    
T  32968600 ttgaatttagttttgaagttgttcgtaatttgttatttgtaccacattgctcaagtttctggactgttcagtatataaatatgattgagtac 32968509  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 8899330 - 8899249
Alignment:
Q  166 tgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaag 248  Q
    |||||||||||| | | |||||||||||||||| |||||||  ||||||||| |||||| || ||| ||||||| ||| ||||    
T  8899330 tgctcaggttctcgagttgttgagtgtataaatgtgcttgaacaccctcatc-tttgagttaacttctgggatgcaattcaag 8899249  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 370787 - 370823
Alignment:
Q  185 ttgagtgtataaatatgcttgagtaccctcatcattt 221  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  370787 ttgagtgtataaatatgtttgagtaccctcgtcattt 370823  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 9383612 - 9383552
Alignment:
Q  168 ctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctag 228  Q
    ||||||||  ||||||||||||  |||||||||| ||||||||||| ||| || |||||||    
T  9383612 ctcaggtttctgggctgttgagcatataaatatgtttgagtacccttatccttagagctag 9383552  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 32968796 - 32968764
Alignment:
Q  122 aagttggttttgaagttatttgtagtttgttat 154  Q
    |||||||||||||||||||||||| ||||||||    
T  32968796 aagttggttttgaagttatttgtattttgttat 32968764  T

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Target: scaffold0236 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 22380 - 22472
Alignment:
Q  157 gtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatgaaatccaagc 249  Q
    |||| |||| ||| ||||||  ||| |||| |||||||||||||||||||||||| ||||| |||||  ||||||||||||||| | ||||||    
T  22380 gtcccacatcgcttaggttcccgggatgttcagtgtataaatatgcttgagtaccttcatcctttgaattagcttttgggatgagaaccaagc 22472  T

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Target: scaffold1432 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 1061 - 952
Alignment:
Q  131 ttgaagttatttgtagtttgttatgtgtcctacattgctcaggttcttgggctgttgagtgtataaatatgcttgagtaccctcatcatttgagctagct 230  Q
    |||||||| ||||||||||||| |  |||  | || ||||||| || | || |||||| |||||||||||| ||||||| ||||||| ||||||  ||||    
T  1061 ttgaagttgtttgtagtttgttgttagtctcatatcgctcaggatcataggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagct 962  T
Q  231 tttgggatga 240  Q
    ||||||||||    
T  961 tttgggatga 952  T

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Target: scaffold0557 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 4632 - 4667
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgtt 152  Q
    |||||||||||||||||||||| |||||||||||||    
T  4632 tgttgaagttggttttgaagttgtttgtagtttgtt 4667  T

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Target: scaffold0549 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 1056 - 1106
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattg 167  Q
    ||||| |||||||||| ||||| ||||||||||||||| |||| |||||||    
T  1056 tgttgtagttggttttaaagttgtttgtagtttgttatttgtcttacattg 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3146 - 3196
Alignment:
Q  117 tgttgaagttggttttgaagttatttgtagtttgttatgtgtcctacattg 167  Q
    ||||| |||||||||| ||||| ||||||||||||||| |||| |||||||    
T  3146 tgttgtagttggttttaaagttgtttgtagtttgttatttgtcttacattg 3196  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 46129 - 46186
Alignment:
Q  183 tgttgagtgtataaatatgcttgagtaccctcatcatttgagctagcttttgggatga 240  Q
    |||||| ||||||||| ||||||||||| || ||| |||||||||| |||| ||||||    
T  46129 tgttgaatgtataaatgtgcttgagtactcttatcctttgagctagattttaggatga 46186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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