View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10925_low_11 (Length: 438)
Name: NF10925_low_11
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10925_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 432
Target Start/End: Complemental strand, 33946490 - 33946088
Alignment:
| Q |
30 |
gaaactaaattttgcatcctttttgaagtagactatatttgattggaatacggttatgaagtaatctccgtgcaaacaataaaaatcttcaaaggaacta |
129 |
Q |
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| T |
33946490 |
gaaactaaattttgcatcctttttgaagtagactatatttgattggaatacggttatgaagtaatctccgtgcaaacaataaaa-tcttcaaaggaacta |
33946392 |
T |
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| Q |
130 |
aagcattctagatgactttatacatgttatatctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcggaattaagatctcaa |
229 |
Q |
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| T |
33946391 |
aagcattctagatgactttatacatgttatatctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcagaattaagatctcaa |
33946292 |
T |
|
| Q |
230 |
acacaggcatctt-ccacattatccttcaatgaaatattagacaacaaaaccttacggtcatccagcaacgcaacctcctacacaaacaaatgttttatc |
328 |
Q |
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| T |
33946291 |
acacaggcatctttccacattatccttcaatgaaatattagacaacaaaaccttacagtcatccaccaacgcaacctcctacacaaacaaatgttttatc |
33946192 |
T |
|
| Q |
329 |
cacctccaacaaccttccttaacatcaatgtctaacatcatatccctcaatgaaacgtttttctttgcaaaattaaacgatctacgaaagcactcctttg |
428 |
Q |
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| T |
33946191 |
cacctccaacaacctcccttaacatcaatgtctaacatcatatccctcaatgaaacgtttttctttgcaaaattaaacaatctacgaaagcactccttag |
33946092 |
T |
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| Q |
429 |
ctac |
432 |
Q |
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|||| |
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| T |
33946091 |
ctac |
33946088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 347
Target Start/End: Original strand, 39123206 - 39123391
Alignment:
| Q |
160 |
atctttaaaattagacatcaacttataagcttctttagcagaatacatgccatcggaattaagatctcaaacacaggcatcttccacattatccttcaat |
259 |
Q |
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||||| ||||||| | ||||| |||||| ||||| || || ||||||| |||||| ||||||||||||||| || | || ||||||||||| || ||| |
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| T |
39123206 |
atcttcaaaattaaatatcaagttataaacttctataacataatacataccatcgagattaagatctcaaac-caagtatattccacattattctacaaa |
39123304 |
T |
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| Q |
260 |
gaaatattagacaacaaaaccttacggtcatccagcaacgcaacctcctacacaaacaaatgttttatccacctccaacaaccttcct |
347 |
Q |
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| T |
39123305 |
gaaatgctagataataaaa-cttacattcatccaccaactcaaccttccaaacaaacaagtttcttctccagctccaacagccttcct |
39123391 |
T |
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