View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10925_low_15 (Length: 346)

Name: NF10925_low_15
Description: NF10925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10925_low_15
NF10925_low_15
[»] chr5 (2 HSPs)
chr5 (14-337)||(28800751-28801070)
chr5 (89-200)||(15063070-15063185)
[»] chr8 (2 HSPs)
chr8 (19-323)||(4282061-4282372)
chr8 (45-146)||(25187880-25187981)
[»] chr3 (1 HSPs)
chr3 (19-335)||(9443534-9443856)
[»] chr2 (4 HSPs)
chr2 (19-227)||(25290536-25290744)
chr2 (172-300)||(19251114-19251248)
chr2 (37-140)||(21019114-21019217)
chr2 (19-69)||(19251002-19251052)
[»] chr6 (1 HSPs)
chr6 (14-146)||(7859317-7859448)
[»] chr4 (1 HSPs)
chr4 (19-158)||(19724214-19724353)
[»] chr1 (2 HSPs)
chr1 (169-217)||(17193029-17193077)
chr1 (90-205)||(23293165-23293280)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 28801070 - 28800751
Alignment:
Q  14 caattctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaa 113  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  28801070 caattctatctaagtaaacaattctaagggttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaa 28800971  T
Q  114 ccttgatattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaataacccaaatagaagcaagtcaaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  28800970 ccttgatattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaataacccaaatag----------aat 28800881  T
Q  214 caaacaaaatccccgtctaacttttcttgatgtaacctcataataccaacat------tgagcaaaaagattatgtggtattaagaaattaaattggaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  28800880 caaacaaaatccccgtctaacttttcttgatgtaacctcataataccaacattcaaagtgagcaaaaagattatgtggtattaagaaattaaattggaac 28800781  T
Q  308 caagacatcactcttcgccacaccttcatc 337  Q
    ||||||||||||||||||||||||||||||    
T  28800780 caagacatcactcttcgccacaccttcatc 28800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 15063070 - 15063185
Alignment:
Q  89 ctcatactccaataccaagctaga----accttgatattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttc 184  Q
    ||||||||||||||||||||||      |||||||||||||| | ||| |||||||||||||||||||||||||  ||||||| |||||||     ||||    
T  15063070 ctcatactccaataccaagctaacgtacaccttgatattctcaatcaattcctctacctcaaccacaccattattgaagataatctcattcatatgcttc 15063169  T
Q  185 caaataacccaaatag 200  Q
    ||||||||| ||||||    
T  15063170 caaataaccgaaatag 15063185  T

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Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 4282372 - 4282061
Alignment:
Q  19 ctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagttta-agtttgctcatactccaataccaagctagaacctt 117  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||  || || |||||||||||||||||||||||||||||    
T  4282372 ctatcttagtaaacaatcccgagggttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctt 4282273  T
Q  118 gatattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaataacccaaatagaagcaagtcaaatcaaa 217  Q
     |||||||| |||| |||||| | ||| || |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||     
T  4282272 tatattctcgaccacatcctccatctctacaacaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaag 4282173  T
Q  218 caaaatccccgtctaacttttcttgatgtaacctcataataccaacat------tgagcaaaaagattatgtggtattaagaaattaaattggaaccaag 311  Q
    |||||||||||||| | ||| || |||| | |||||||||||||||||      | ||||||||||||| ||||||| | |||||||||||| | || ||    
T  4282172 caaaatccccgtcttattttcctagatgaagcctcataataccaacattcaaaattagcaaaaagattacgtggtataatgaaattaaattgtagcctag 4282073  T
Q  312 acatcactcttc 323  Q
    ||||||| ||||    
T  4282072 acatcacccttc 4282061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 25187880 - 25187981
Alignment:
Q  45 tccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacctc 144  Q
    |||||||||||||||||||||| ||  | |||| ||| |  || ||||||||||||||||||||||  | ||||||||| || ||||| ||||||| |||    
T  25187880 tccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctc 25187979  T
Q  145 aa 146  Q
    ||    
T  25187980 aa 25187981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 9443534 - 9443856
Alignment:
Q  19 ctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaaccttg 118  Q
    ||||| |||||| || | ||||||||||||||||||||||||| |||| || | ||||| ||| || || ||||||||||||||||||||||| ||||||    
T  9443534 ctatcgaagtaagcactcccgagggttccaacaccactcataagacaagcacgtcgctatttttagcttactcatactccaataccaagctaggaccttg 9443633  T
Q  119 atattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaataacccaaatagaagcaagtcaaatcaaac 218  Q
    |||||||||||||| ||||| | ||||||||||||||||| ||| || |||||||||  | ||||||||||||||||||||||| |||| ||||| ||      
T  9443634 atattctccaccaattcctccatctcaaccacaccattattaaaaatcacctcattctttttcttccaaataacccaaatagaatcaagccaaattaaga 9443733  T
Q  219 aaaatccccgtctaacttttcttgatgtaacctcataataccaacat------tgagcaaaaagattatgtggtattaagaaattaaattggaaccaaga 312  Q
    ||||| ||||||| | |||    || | | ||||||||||||| |||      || | |||||||||||||||||||| ||||| ||| || | |  |||    
T  9443734 aaaatacccgtctcattttcaaagaaggagcctcataataccaccattcaaaatgtgaaaaaagattatgtggtattacgaaatgaaaatgtagcacaga 9443833  T
Q  313 catcactcttcgccacaccttca 335  Q
    |||||| ||| ||||||||||||    
T  9443834 catcaccctttgccacaccttca 9443856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 25290744 - 25290536
Alignment:
Q  19 ctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaaccttg 118  Q
    |||||||||||| || | |||||||||||||| |||||||||||||||||| ||  | | ||| |  || ||||||||||||||||||||||||| ||||    
T  25290744 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactccaataccaagctagaatcttg 25290645  T
Q  119 atattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaataacccaaatagaagcaagtcaaatcaaac 218  Q
    || ||||| |  |||   ||||| |  |||||||||||||  || |||| |||||||| |  ||||||||| || |||||||| ||||| ||||||||||    
T  25290644 atcttctcaatgaaaatatctacattcaccacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaac 25290545  T
Q  219 aaaatcccc 227  Q
    |||||||||    
T  25290544 aaaatcccc 25290536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 19251114 - 19251248
Alignment:
Q  172 attccgtctcttccaaataacccaaatagaagcaagtcaaatcaaacaaaatccccgtctaacttttcttgatgtaacctcataataccaacatt----- 266  Q
    ||||| ||||||||||||| ||||||||||| |||  ||||||||| |||| |||| ||||| |||  | || ||| |||| | | |||||||||         
T  19251114 attccatctcttccaaatagcccaaatagaatcaacccaaatcaaataaaaaccccttctaattttattagaagtagcctccttaaaccaacattcaaaa 19251213  T
Q  267 -gagcaaaaagattatgtggtattaagaaattaaa 300  Q
     || |||||||||||||  ||||||||||||||||    
T  19251214 cgaacaaaaagattatgaagtattaagaaattaaa 19251248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 21019217 - 21019114
Alignment:
Q  37 ccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcc 136  Q
    |||||| ||||||||||||||||| || | ||||||||  | ||| |  || |||| |||||||||||| | |||||| || ||||| |||||||||||     
T  21019217 ccgaggattccaacaccactcatagtaaagacatgacgtgatttttaacttactcaaactccaataccatgatagaactttaatattttccaccaaatca 21019118  T
Q  137 tcta 140  Q
    ||||    
T  21019117 tcta 21019114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 19251002 - 19251052
Alignment:
Q  19 ctatctaagtaaacaattccgagggttccaacaccactcataatacaaaca 69  Q
    |||||||||||| || | |||||||||| ||||||||| ||||||||||||    
T  19251002 ctatctaagtaagcattaccgagggttctaacaccacttataatacaaaca 19251052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 7859448 - 7859317
Alignment:
Q  14 caattctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaa 113  Q
    |||| |||||||||||| |||| || ||  ||| |||||||||||||||||||||| | ||||| | | || || |||||||||||||||||||| ||||    
T  7859448 caatcctatctaagtaa-caatcccaagaattcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaa 7859350  T
Q  114 ccttgatattctccaccaaatcctctacctcaa 146  Q
    ||||||||||||||||||||||||||| |||||    
T  7859349 ccttgatattctccaccaaatcctctatctcaa 7859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 19724214 - 19724353
Alignment:
Q  19 ctatctaagtaaacaattccgagggttccaacaccactcataatacaaacatgacgctagtttaagtttgctcatactccaataccaagctagaaccttg 118  Q
    ||||||||||||||| | | |||||||||||||| |||| ||||||||||||||  | | |||  || | ||||||||||||||||||||||  ||||||    
T  19724214 ctatctaagtaaacactcctgagggttccaacacaactcttaatacaaacatgataccattttttgtctactcatactccaataccaagctaacaccttg 19724313  T
Q  119 atattctccaccaaatcctctacctcaaccacaccattat 158  Q
    |||||||| | ||| || |||||||||| |||||||||||    
T  19724314 atattctcaatcaattcttctacctcaagcacaccattat 19724353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 17193077 - 17193029
Alignment:
Q  169 ctcattccgtctcttccaaataacccaaatagaagcaagtcaaatcaaa 217  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||    
T  17193077 ctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaaa 17193029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 23293165 - 23293280
Alignment:
Q  90 tcatactccaataccaagctagaaccttgatattctccaccaaatcctctacctcaaccacaccattataaaagataacctcattccgtctcttccaaat 189  Q
    |||||||| |||||||||  || || |||||| | |||||||| || || ||||||||||||||||| | ||| ||||  |||||||  |||  ||||||    
T  23293165 tcatactctaataccaagagagcactttgatactatccaccaagtcttcaacctcaaccacaccattgttaaaaataatatcattcctcctccgccaaat 23293264  T
Q  190 aacccaaatagaagca 205  Q
     |||||||| ||||||    
T  23293265 tacccaaatcgaagca 23293280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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